Gene: vmacro11393
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro11393
- Transcript Identifier vmacro11393-RA
- Gene Type Coding gene
- Location chr8_Vaccinium_macrocarpon_Stevens_v1 : 32169176-32174190 : positive
Gene Family Information
- ID HOM05D003441
- #Genes/#Species 198/99
- Phylogenetic origin
- ID ORTHO05D004516
- #Genes/#Species 178/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id vmacro11393_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to XPB1: General transcription and DNA repair factor IIH helicase subunit XPB1 (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006289 | ISO | PLAZA Homology (enrichment) | nucleotide-excision repair | HOM05D003441 |
| GO:0009411 | ISO | PLAZA Integrative Orthology | response to UV | AT5G41370 |
| GO:0009636 | ISO | PLAZA Integrative Orthology | response to toxic substance | AT5G41370 |
| GO:0010224 | ISO | PLAZA Integrative Orthology | response to UV-B | AT5G41360 |
| GO:0006367 | ISO | PLAZA Homology (enrichment) | transcription initiation from RNA polymerase II promoter | HOM05D003441 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D003441 |
| GO:0003677 | ISO | PLAZA Homology (enrichment) | DNA binding | HOM05D003441 |
| GO:0003678 | ISO | PLAZA Homology (enrichment) | DNA helicase activity | HOM05D003441 |
| GO:0016787 | ISO | PLAZA Homology (enrichment) | hydrolase activity | HOM05D003441 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G41370 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G41370 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR032830 | Helicase XPB/Ssl2, N-terminal domain |
| Mapman id | Description |
|---|---|
| 14.6.3.2.3 | DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit SSL2/XPB |
| 15.3.3.5.1.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB |