Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZFLV96 Arachis hypogaea HOM05D000428 ORTHO05D005608 6.8e-103 377.9 277 100.0
arahy.Tifrunner.gnm1.ann1.FMI53U Arachis hypogaea HOM05D000428 ORTHO05D005608 3.2e-76 289.3 390 66.2
arahy.Tifrunner.gnm1.ann1.IVLA97 Arachis hypogaea HOM05D000428 ORTHO05D005608 9.3e-76 287.7 285 61.1
arahy.Tifrunner.gnm1.ann1.57NA14 Arachis hypogaea HOM05D000428 ORTHO05D005608 1.1e-71 274.2 443 58.0
Lalb_Chr03g0043151 Lupinus albus HOM05D000428 ORTHO05D005608 3.8e-69 265.8 290 56.2
Ca_17089_v3 Cicer arietinum L. HOM05D000428 ORTHO05D005608 1.6e-64 250.4 290 53.4
Manes.02G141500 Manihot esculenta HOM05D000428 ORTHO05D005608 1.4e-63 247.3 290 53.1
Potri.007G028300 Populus trichocarpa HOM05D000428 ORTHO05D005608 2.2e-61 240.0 290 53.1
Sed0010481 Sechium edule HOM05D000428 ORTHO05D005608 2.2e-61 240.0 290 52.8
TWI09G0303 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 2.9e-61 239.6 289 51.2
Cfa018514 Carpinus fangiana HOM05D000428 ORTHO05D005608 5.0e-61 238.8 290 53.1
Lj3g0014328 Lotus japonicus HOM05D000428 ORTHO05D005608 6.5e-61 238.4 285 53.7
Thecc.01G038800 Theobroma cacao HOM05D000428 ORTHO05D005608 6.5e-61 238.4 293 52.2
CSS0045131 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.4e-60 237.3 287 50.9
Duzib147G0139 Durio zibethinus HOM05D000428 ORTHO05D005608 1.4e-60 237.3 291 52.2
Actinidia35650 Actinidia chinensis HOM05D000428 ORTHO05D005608 4.2e-60 235.7 292 50.3
PGR044G2753 Punica granatum HOM05D000428 ORTHO05D005608 9.3e-60 234.6 289 53.6
TPR.G24896 Trifolium pratense HOM05D000428 ORTHO05D005608 1.2e-59 234.2 263 54.4
TWI53G1177 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 2.1e-59 233.4 290 50.3
Duzib264G0582 Durio zibethinus HOM05D000428 ORTHO05D005608 3.6e-59 232.6 288 51.0
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 3.6e-59 232.6 293 52.2
Dinv39964 Davidia involucrata HOM05D000428 ORTHO05D005608 1.0e-58 231.1 299 50.2
CiPaw.01G035300 Carya illinoinensis HOM05D000428 ORTHO05D005608 1.8e-58 230.3 288 52.1
CSS0018038 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 2.3e-58 229.9 292 49.3
CANSAT01G1769 Cannabis sativa HOM05D000428 ORTHO05D005608 3.9e-58 229.2 293 51.5
Cpa.g.sc44.55 Carica papaya HOM05D000428 ORTHO05D005608 3.9e-58 229.2 290 51.7
FvH4_7g10600 Fragaria vesca HOM05D000428 ORTHO05D005608 5.1e-58 228.8 288 51.7
FAN06G0286 Fragaria x ananassa HOM05D000428 ORTHO05D005608 5.1e-58 228.8 288 51.7
Nn1g04186 Nelumbo nucifera HOM05D000428 ORTHO05D005608 5.1e-58 228.8 245 55.5
Cc07_g09270 Coffea canephora HOM05D000428 ORTHO05D005608 6.7e-58 228.4 290 50.7
Glyma.09G001000 Glycine max HOM05D000428 ORTHO05D005608 6.7e-58 228.4 290 51.7
Lj4C198T4 Lonicera japonica HOM05D000428 ORTHO05D005608 6.7e-58 228.4 264 54.2
MD07G1111200 Malus domestica HOM05D000428 ORTHO05D005608 6.7e-58 228.4 292 51.4
TAR376G0105 Trochodendron aralioides HOM05D000428 ORTHO05D005608 6.7e-58 228.4 290 49.3
CiPaw.02G015800 Carya illinoinensis HOM05D000428 ORTHO05D005608 1.5e-57 227.3 293 51.9
FAN01G3018 Fragaria x ananassa HOM05D000428 ORTHO05D005608 2.5e-57 226.5 288 51.4
Glyma.12G240700 Glycine max HOM05D000428 ORTHO05D005608 4.3e-57 225.7 290 50.7
Phvul.011G214800 Phaseolus vulgaris HOM05D000428 ORTHO05D005608 4.3e-57 225.7 290 51.0
Potri.005G125300 Populus trichocarpa HOM05D000428 ORTHO05D005608 4.3e-57 225.7 279 52.7
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 5.7e-57 225.3 290 51.4
FAN06G3568 Fragaria x ananassa HOM05D000428 ORTHO05D005608 7.4e-57 224.9 288 51.4
MBI16_g36970_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 7.4e-57 224.9 271 53.5
MELO3C006787.2 Cucumis melo HOM05D000428 ORTHO05D005608 9.7e-57 224.6 269 52.8
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 1.3e-56 224.2 292 50.7
Sabra05G0102900 Salix brachista HOM05D000428 ORTHO05D005608 1.3e-56 224.2 281 51.6
VMungo1127G1890 Vigna mungo HOM05D000428 ORTHO05D005608 1.3e-56 224.2 289 50.9
ClCG05G007140 Citrullus lanatus HOM05D000428 ORTHO05D005608 1.6e-56 223.8 276 51.8
Ciclev10025862m.g Citrus clementina HOM05D000428 ORTHO05D005608 1.6e-56 223.8 287 50.2
Gohir.D10G093100 Gossypium hirsutum HOM05D000428 ORTHO05D005608 3.7e-56 222.6 288 50.0
Gorai.011G102300 Gossypium raimondii HOM05D000428 ORTHO05D005608 3.7e-56 222.6 288 50.0
CsaV3_3G015880 Cucumis sativus L. HOM05D000428 ORTHO05D005608 6.3e-56 221.9 276 51.4
PGSC0003DMG400005746 Solanum tuberosum HOM05D000428 ORTHO05D005608 1.1e-55 221.1 302 47.4
Solyc03g118800.3 Solanum lycopersicum HOM05D000428 ORTHO05D005608 2.4e-55 219.9 288 47.6
Sopen03g037750 Solanum pennellii HOM05D000428 ORTHO05D005608 2.4e-55 219.9 288 47.6
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 4.1e-55 219.2 292 50.7
CSS0012257 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 5.3e-55 218.8 263 51.7
PGSC0003DMG400008934 Solanum tuberosum HOM05D000428 ORTHO05D005608 5.3e-55 218.8 264 49.2
DCAR_025927 Daucus carota HOM05D000428 ORTHO05D005608 9.0e-55 218.0 285 50.5
Eucgr.H02772 Eucalyptus grandis HOM05D000428 ORTHO05D005608 1.2e-54 217.6 296 50.0
Medtr3g065190 Medicago truncatula HOM05D000428 ORTHO05D005608 1.2e-54 217.6 276 50.7
MBI16_g35646_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 1.5e-54 217.2 290 49.7
Sc03g0000830 Simmondsia chinensis HOM05D000428 ORTHO05D005608 2.0e-54 216.9 289 49.5
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 2.6e-54 216.5 290 49.0
Lsat_1_v5_gn_5_24320 Lactuca sativa HOM05D000428 ORTHO05D005608 3.4e-54 216.1 292 49.0
Nitab4.5_0001456g0190 Nicotiana tabacum HOM05D000428 ORTHO05D005608 3.4e-54 216.1 293 47.8
COL.COLO4_22108 Corchorus olitorius HOM05D000428 ORTHO05D005608 7.7e-54 214.9 251 52.6
Peaxi162Scf00759g00212 Petunia axillaris HOM05D000428 ORTHO05D005608 1.0e-53 214.5 255 50.6
Sed0000925 Sechium edule HOM05D000428 ORTHO05D005608 1.3e-53 214.2 190 65.3
HanXRQChr05g0157731 Helianthus annuus HOM05D000428 ORTHO05D005608 2.9e-53 213.0 289 48.1
vmacro17854 Vaccinium macrocarpon HOM05D000428 ORTHO05D005608 3.8e-53 212.6 322 45.3
Aa31LG8G15550 Aethionema arabicum HOM05D000428 ORTHO05D005608 5.0e-53 212.2 288 49.3
Atru.chr12.2192 Acer truncatum HOM05D000428 ORTHO05D005608 6.5e-53 211.8 187 62.6
ECA246G0987 Erigeron canadensis HOM05D000428 ORTHO05D005608 8.5e-53 211.5 265 50.2
Sabra07G0024500 Salix brachista HOM05D000428 ORTHO05D005608 1.1e-52 211.1 190 64.7
Actinidia19172 Actinidia chinensis HOM05D000428 ORTHO05D005608 1.4e-52 210.7 192 62.0
AUR62007997 Chenopodium quinoa HOM05D000428 ORTHO05D005608 1.9e-52 210.3 257 51.8
Psat5g120280 Pisum sativum HOM05D000428 ORTHO05D005608 1.2e-51 207.6 263 50.2
Hund16583 Selenicereus undatus HOM05D000428 ORTHO05D005608 1.6e-51 207.2 295 49.5
THA.LOC104807442 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 1.6e-51 207.2 264 49.6
THA.LOC104819794 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 2.7e-51 206.5 265 50.2
CARHR109120 Cardamine hirsuta HOM05D000428 ORTHO05D005608 6.1e-51 205.3 264 48.9
AUR62003178 Chenopodium quinoa HOM05D000428 ORTHO05D005608 7.9e-51 204.9 252 50.8
EL10Ac6g14921 Beta vulgaris HOM05D000428 ORTHO05D005608 1.0e-50 204.5 264 48.9
Aqoxy5G01673 Aquilegia oxysepala HOM05D000428 ORTHO05D005608 1.4e-50 204.1 264 49.6
TAR625G0488 Trochodendron aralioides HOM05D000428 ORTHO05D005608 2.3e-50 203.4 246 49.6
HPP92_009245 Vanilla planifolia HOM05D000428 ORTHO05D005608 8.8e-50 201.4 252 48.4
Dinv26816 Davidia involucrata HOM05D000001 ORTHO05D010258 1.1e-49 201.1 162 67.9
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 2.6e-49 199.9 291 47.1
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 5.7e-49 198.7 264 48.5
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 7.4e-49 198.4 190 60.0
AT2G18510 Arabidopsis thaliana HOM05D000428 ORTHO05D005608 9.7e-49 198.0 291 48.5
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 2.8e-48 196.4 290 49.0
CDE04G3638 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 2.8e-48 196.4 241 49.8
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 2.8e-48 196.4 249 49.4
Ah.03g139440 Amaranthus hybridus HOM05D000428 ORTHO05D005608 3.7e-48 196.1 292 47.3
BraA09t36839Z Brassica rapa HOM05D000428 ORTHO05D005608 3.7e-48 196.1 264 47.7
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 3.7e-48 196.1 264 48.9
Os10g0457000 Oryza sativa ssp. japonica HOM05D000428 ORTHO05D005608 8.2e-48 194.9 287 46.7
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 1.1e-47 194.5 264 48.5
BcaC04g22900 Brassica carinata HOM05D000428 ORTHO05D005608 1.4e-47 194.1 264 47.3
A09p11940 Brassica napus HOM05D000428 ORTHO05D005608 1.4e-47 194.1 264 47.3
C09p14060 Brassica napus HOM05D000428 ORTHO05D005608 1.4e-47 194.1 264 47.3
BolC9t54303H Brassica oleracea HOM05D000428 ORTHO05D005608 1.4e-47 194.1 264 47.3
Sp3g31970 Schrenkiella parvula HOM05D000428 ORTHO05D005608 1.4e-47 194.1 292 48.6
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 4.1e-47 192.6 246 50.4
GSVIVG01018991001 Vitis vinifera HOM05D000428 ORTHO05D005608 4.1e-47 192.6 232 51.3
Thhalv10022741m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 6.9e-47 191.8 252 48.8
CDE07G0828 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 9.1e-47 191.4 290 46.2
Mapoly0043s0056 Marchantia polymorpha HOM05D000428 ORTHO05D005608 5.9e-46 188.7 251 47.8
BcaB03g16632 Brassica carinata HOM05D000428 ORTHO05D005608 1.0e-45 188.0 291 46.0
Zm00001eb222330 Zea mays HOM05D000428 ORTHO05D005608 2.2e-45 186.8 284 44.7
BolC7t40824H Brassica oleracea HOM05D000428 ORTHO05D005608 8.5e-45 184.9 291 45.7
QL06p045519 Quercus lobata HOM05D000428 ORTHO05D005608 1.4e-44 184.1 368 40.2
A07p02180 Brassica napus HOM05D000428 ORTHO05D005608 1.9e-44 183.7 291 45.4
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 5.5e-44 182.2 290 45.2
C07p04290 Brassica napus HOM05D000428 ORTHO05D005608 7.2e-44 181.8 291 45.4
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 2.1e-43 180.3 156 64.7
FvH4_7g22430 Fragaria vesca HOM05D000428 ORTHO05D005608 1.0e-42 177.9 289 44.3
BcaB07g31658 Brassica carinata HOM05D000428 ORTHO05D005608 3.9e-42 176.0 277 43.7
Pp3c12_13810 Physcomitrium patens HOM05D000428 ORTHO05D005608 6.7e-42 175.3 303 42.2
CBR_g39039 Chara braunii HOM05D000428 ORTHO05D005608 4.4e-41 172.6 260 43.5
Zm00001eb046700 Zea mays HOM05D000428 ORTHO05D005608 9.1e-39 164.9 188 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1742 Anthoceros agrestis HOM05D000428 ORTHO05D005608 1.3e-37 161.0 138 63.0
AagrBONN_evm.TU.Sc2ySwM_228.3498 Anthoceros agrestis HOM05D000428 ORTHO05D005608 1.3e-37 161.0 138 63.0
Carub.0003s2855 Capsella rubella HOM05D000428 ORTHO05D005608 1.2e-35 154.5 281 39.5
Thhalv10023032m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 1.6e-35 154.1 272 42.6
AL3G46120 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 3.6e-35 152.9 185 52.4
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 4.7e-35 152.5 206 47.6
Migut.L00561 Erythranthe guttata HOM05D000428 ORTHO05D005608 3.0e-34 149.8 140 60.7
Hma1.2p1_0196F.1_g084770 Hydrangea macrophylla HOM05D000428 ORTHO05D005608 5.7e-33 145.6 110 71.8
TAR628G0051 Trochodendron aralioides HOM05D000428 ORTHO05D005608 9.7e-33 144.8 303 38.3
SGA_v2.0_scaffold85G26723 Striga asiatica HOM05D000428 ORTHO05D005608 3.1e-31 139.8 130 62.3
FAN01G1501 Fragaria x ananassa HOM05D000428 ORTHO05D005608 5.9e-30 135.6 144 54.2
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 1.3e-29 134.4 256 39.1
BcaC06g36421 Brassica carinata HOM05D000428 ORTHO05D005608 2.2e-29 133.7 301 38.5
Oeu021560.1 Olea europaea HOM05D000428 ORTHO05D005608 2.9e-29 133.3 198 47.5
Haze_25371 Corylus avellana HOM05D000428 ORTHO05D005608 8.5e-29 131.7 275 39.6
MCO05G316 Micromonas commoda HOM05D000428 ORTHO05D005608 6.1e-27 125.6 225 36.9
Carub.0124s0001 Capsella rubella HOM05D000428 ORTHO05D005608 2.3e-26 123.6 259 37.5
RcHm_v2.0_Chr2g0096981 Rosa chinensis HOM05D000428 ORTHO05D005608 2.2e-24 117.1 119 56.3
BraA07t28012Z Brassica rapa HOM05D000428 ORTHO05D005608 1.8e-23 114.0 192 40.1
Haze_27247 Corylus avellana HOM05D000428 ORTHO05D005608 4.1e-23 112.8 186 41.9
FAN01G0105 Fragaria x ananassa HOM05D000428 ORTHO05D005608 2.7e-22 110.2 104 58.7
Nitab4.5_0003968g0050 Nicotiana tabacum HOM05D000428 ORTHO05D005608 1.7e-21 107.5 143 46.2
FvH4_7g10540 Fragaria vesca HOM05D000428 ORTHO05D005608 2.2e-21 107.1 220 42.3
PRCOL_00003038 Prasinoderma coloniale HOM05D000428 ORTHO05D005608 2.0e-17 94.0 151 40.4
Haze_25370 Corylus avellana HOM05D000428 ORTHO05D005608 9.2e-15 85.1 87 62.1
SHI22921 Sapria himalayana HOM05D000428 ORTHO05D005608 1.2e-14 84.7 45 88.9
BcaB08g36044 Brassica carinata HOM05D000428 ORTHO05D011443 2.3e-13 80.5 70 61.4
Actinidia37019 Actinidia chinensis HOM05D000428 ORTHO05D005608 1.5e-12 77.8 118 43.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.2e-11 74.7 127 40.2
SHI22919 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-11 74.3 77 51.9
BcaC02g10353 Brassica carinata HOM05D000724 ORTHO05D011443 3.0e-10 70.1 41 73.2
C08p41460 Brassica napus HOM05D000724 ORTHO05D011443 4.4e-09 66.2 43 69.8
BolC8t51707H Brassica oleracea HOM05D000724 ORTHO05D011443 4.4e-09 66.2 43 69.8
BcaC06g36082 Brassica carinata HOM05D000724 ORTHO05D011443 5.7e-09 65.9 43 65.1
C07p08050 Brassica napus HOM05D000724 ORTHO05D011443 5.7e-09 65.9 43 65.1
BolC7t41222H Brassica oleracea HOM05D000428 ORTHO05D011443 5.7e-09 65.9 43 65.1
RcHm_v2.0_Chr5g0061171 Rosa chinensis HOM05D000428 ORTHO05D005608 3.7e-08 63.2 60 56.7
Haze_18736 Corylus avellana HOM05D000052 ORTHO05D000046 4.9e-08 62.8 32 90.6
SMO356G0479 Selaginella moellendorffii HOM05D000428 ORTHO05D005608 8.3e-08 62.0 121 38.0
C06p18010 Brassica napus HOM05D000724 ORTHO05D011443 1.1e-07 61.6 34 79.4
BcaB07g32797 Brassica carinata HOM05D000428 ORTHO05D005608 2.4e-07 60.5 36 80.6
C03p42250 Brassica napus HOM05D000724 ORTHO05D011443 2.4e-07 60.5 38 71.1
C09p48790 Brassica napus HOM05D000724 ORTHO05D011443 3.2e-07 60.1 38 68.4
BolC9t57726H Brassica oleracea HOM05D000724 ORTHO05D011443 3.2e-07 60.1 38 68.4


User provided reference genes

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