Gene: COL.COLO4_22108

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_22108
  • Transcript Identifier COL.rna20856
  • Gene Type Coding gene
  • Location AWUE01017851.1 : 47540-50289 : negative

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna20856
  • GenBank OMO84354.1
  • id gene22080
  • gene_name COLO4_22108
  • uniprot A0A1R3IP40

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010075
ISO
PLAZA Integrative Orthologyregulation of meristem growth AT2G18510
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT2G18510
GO:0006357
ISO
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II AT2G18510

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0070063
ISO
PLAZA Integrative OrthologyRNA polymerase binding AT2G18510
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G18510
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G18510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G18510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034158 SF3B4, RNA recognition motif 1
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR034159 SF3B4, RNA recognition motif 2
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.1.2.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B4