Gene: Sopen03g037750

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g037750
  • Transcript Identifier Sopen03g037750.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 72186679-72190567 : positive

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g037750.1

Descriptions

  • Description embryo defective 2444 (emb2444) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: embryo development ending in seed dormancy | LOCATED IN: nucleolus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010075
ISO
PLAZA Integrative Orthologyregulation of meristem growth AT2G18510
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT2G18510
GO:0006357
ISO
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II AT2G18510

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0070063
ISO
PLAZA Integrative OrthologyRNA polymerase binding AT2G18510
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G18510
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D000428
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G18510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G18510
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G18510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR034158 SF3B4, RNA recognition motif 1
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR034159 SF3B4, RNA recognition motif 2
Mapman id Description
16.2.1.2.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B4