Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z0QB2S Arachis hypogaea HOM05D001758 ORTHO05D023731 2.0e-44 182.6 130 100.0
arahy.Tifrunner.gnm1.ann1.BNAN0X Arachis hypogaea HOM05D001758 ORTHO05D023731 3.6e-38 161.8 123 71.5
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 7.5e-36 154.1 126 69.8
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 1.7e-35 152.9 126 68.3
Glyma.11G095501 Glycine max HOM05D001758 ORTHO05D004430 6.2e-30 134.4 134 59.7
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 1.4e-29 133.3 133 66.2
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 2.0e-28 129.4 133 63.2
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 4.4e-28 128.3 131 58.0
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 1.3e-27 126.7 131 57.3
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 4.9e-27 124.8 127 65.4
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 8.3e-27 124.0 131 55.7
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 1.4e-26 123.2 128 56.2
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 1.9e-26 122.9 131 56.5
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 4.1e-26 121.7 127 55.1
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 5.4e-26 121.3 135 53.3
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 5.4e-26 121.3 127 55.9
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 7.1e-26 120.9 134 70.1
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 7.1e-26 120.9 133 53.4
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 9.2e-26 120.6 128 54.7
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 9.2e-26 120.6 127 67.7
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 1.2e-25 120.2 137 54.0
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 1.6e-25 119.8 128 54.7
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 1.6e-25 119.8 132 58.3
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 2.1e-25 119.4 132 53.8
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 2.1e-25 119.4 141 57.4
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 2.1e-25 119.4 135 63.7
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 2.7e-25 119.0 129 54.3
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 2.7e-25 119.0 127 53.5
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 2.7e-25 119.0 135 52.6
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 3.5e-25 118.6 131 54.2
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 4.6e-25 118.2 134 53.0
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 6.0e-25 117.9 131 53.4
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 7.8e-25 117.5 135 68.1
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 1.0e-24 117.1 138 55.8
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 1.3e-24 116.7 134 52.2
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 1.3e-24 116.7 134 52.2
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 1.3e-24 116.7 134 52.2
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 1.3e-24 116.7 134 52.2
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 1.3e-24 116.7 134 52.2
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 1.3e-24 116.7 139 69.8
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 1.7e-24 116.3 134 57.5
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 1.7e-24 116.3 136 56.6
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 1.7e-24 116.3 143 51.0
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.7e-24 116.3 137 53.3
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 1.7e-24 116.3 137 53.3
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 1.7e-24 116.3 134 67.9
Cpa.g.sc180.11 Carica papaya HOM05D001758 ORTHO05D004430 3.0e-24 115.5 132 58.3
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 3.0e-24 115.5 137 68.6
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 3.0e-24 115.5 136 66.9
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 3.9e-24 115.2 134 56.7
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 3.9e-24 115.2 136 48.5
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 3.9e-24 115.2 138 50.0
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 5.1e-24 114.8 134 66.4
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 5.1e-24 114.8 134 51.5
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 5.1e-24 114.8 137 52.6
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 5.1e-24 114.8 134 51.5
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 6.6e-24 114.4 136 49.3
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 8.6e-24 114.0 129 65.9
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 8.6e-24 114.0 131 53.4
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 8.6e-24 114.0 132 53.8
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.1e-23 113.6 73 78.1
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 1.1e-23 113.6 137 50.4
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 1.5e-23 113.2 139 56.8
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 1.9e-23 112.8 138 65.2
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 2.5e-23 112.5 138 48.6
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 3.3e-23 112.1 136 50.7
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.3e-23 111.7 136 50.7
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 4.3e-23 111.7 145 48.3
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 7.3e-23 110.9 145 54.5
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 7.3e-23 110.9 128 53.9
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 9.5e-23 110.5 73 74.0
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 9.5e-23 110.5 139 48.2
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 9.5e-23 110.5 139 56.8
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 1.2e-22 110.2 138 54.3
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.6e-22 109.8 136 48.5
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 1.6e-22 109.8 135 52.6
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 2.1e-22 109.4 138 65.9
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 2.8e-22 109.0 73 76.7
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 2.8e-22 109.0 127 52.0
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 2.8e-22 109.0 127 52.0
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 3.6e-22 108.6 135 48.1
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 3.6e-22 108.6 138 50.7
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 3.6e-22 108.6 73 72.6
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 6.2e-22 107.8 136 61.0
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 8.1e-22 107.5 137 50.4
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 8.1e-22 107.5 137 50.4
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 8.1e-22 107.5 73 72.6
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.1e-21 107.1 138 47.1
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.4e-21 106.7 136 49.3
BcaNung04480 Brassica carinata HOM05D001758 ORTHO05D004430 1.8e-21 106.3 127 52.0
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.8e-21 106.3 73 71.2
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 2.4e-21 105.9 136 49.3
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 2.4e-21 105.9 73 75.3
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 2.4e-21 105.9 132 49.2
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 3.1e-21 105.5 139 50.4
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 4.0e-21 105.1 127 51.2
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 4.0e-21 105.1 127 51.2
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 4.0e-21 105.1 140 53.6
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 4.0e-21 105.1 139 52.5
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 4.0e-21 105.1 140 48.6
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 4.0e-21 105.1 138 50.0
CARHR230790 Cardamine hirsuta HOM05D001758 ORTHO05D023731 6.8e-21 104.4 72 75.0
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 6.8e-21 104.4 136 49.3
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 8.9e-21 104.0 72 75.0
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.2e-20 103.6 141 48.9
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 1.2e-20 103.6 135 47.4
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 2.0e-20 102.8 133 48.9
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 2.6e-20 102.4 141 53.9
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.6e-20 102.4 141 48.2
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.6e-20 102.4 141 48.2
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 2.6e-20 102.4 141 48.2
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 2.6e-20 102.4 73 74.0
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 69.9
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 68.5
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 71.2
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 72.6
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 72.6
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 72.6
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 4.4e-20 101.7 73 72.6
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 5.8e-20 101.3 69 72.5
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 5.8e-20 101.3 73 71.2
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 5.8e-20 101.3 73 72.6
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 5.8e-20 101.3 73 76.7
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 5.8e-20 101.3 134 47.8
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 7.6e-20 100.9 73 72.6
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 7.6e-20 100.9 73 68.5
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 1.7e-19 99.8 73 72.6
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 2.2e-19 99.4 73 71.2
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 2.9e-19 99.0 73 71.2
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 3.8e-19 98.6 124 49.2
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 3.8e-19 98.6 73 68.5
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 3.8e-19 98.6 73 71.2
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 4.9e-19 98.2 73 69.9
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 4.9e-19 98.2 132 47.7
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 6.4e-19 97.8 73 65.8
arahy.Tifrunner.gnm1.ann1.BTFJ3K Arachis hypogaea HOM05D001758 ORTHO05D082785 8.4e-19 97.4 84 61.9
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 8.4e-19 97.4 66 75.8
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 8.4e-19 97.4 132 47.7
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 1.1e-18 97.1 73 69.9
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 2.4e-18 95.9 136 49.3
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 3.2e-18 95.5 71 70.4
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 9.2e-18 94.0 73 68.5
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-17 93.2 69 65.2
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 2.1e-17 92.8 73 67.1
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 2.7e-17 92.4 65 70.8
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 6.0e-17 91.3 73 64.4
Lj2A182G26 Lonicera japonica HOM05D001758 ORTHO05D023731 1.0e-16 90.5 73 64.4
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 1.3e-16 90.1 70 67.1
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.7e-16 89.7 69 65.2
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 2.3e-16 89.4 73 65.8
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 3.0e-16 89.0 66 71.2
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 5.1e-16 88.2 79 60.8
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 1.1e-15 87.0 74 63.5
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 2.5e-15 85.9 69 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 3.3e-15 85.5 74 60.8
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 7.3e-15 84.3 69 62.3
MBI10_g48086_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 6.2e-14 81.3 131 42.7
Lalb_Chr09g0320541 Lupinus albus HOM05D001758 ORTHO05D023731 9.0e-13 77.4 49 75.5
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 6.4e-11 71.2 43 81.4
PRCOL_00003609 Prasinoderma coloniale HOM05D001758 ORTHO05D004430 2.4e-10 69.3 73 54.8
CAN.G491.13 Capsicum annuum HOM05D001758 ORTHO05D018856 1.2e-09 67.0 67 53.7
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 4.6e-09 65.1 61 50.8
Actinidia36812 Actinidia chinensis HOM05D001758 ORTHO05D023347 7.8e-09 64.3 43 69.8
CAN.G453.6 Capsicum annuum HOM05D001758 ORTHO05D018856 1.9e-07 59.7 61 54.1
MCO01G139 Micromonas commoda HOM05D001758 ORTHO05D004430 2.8e-06 55.8 51 54.9


User provided reference genes

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