Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.0e-265 919.5 453 100.0
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.4e-262 909.1 450 99.1
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.5e-219 765.4 450 81.1
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.4e-214 749.6 452 79.4
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 5.0e-212 741.1 453 77.9
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 2.5e-211 738.8 453 78.1
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 9.5e-211 736.9 453 77.5
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.8e-210 735.3 456 78.5
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 4.7e-210 734.6 450 77.6
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.2e-208 729.9 453 77.3
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 5.7e-208 727.6 452 77.7
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.3e-207 726.5 450 77.3
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 1.1e-206 723.4 455 76.3
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 9.2e-206 720.3 450 77.1
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.6e-205 719.5 485 71.5
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 1.3e-204 716.5 454 76.9
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.7e-204 716.1 450 75.6
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.5e-203 713.0 453 74.8
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 5.6e-203 711.1 450 75.6
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 2.8e-202 708.8 450 74.2
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.8e-202 708.8 450 75.1
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 6.2e-202 707.6 450 74.4
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 8.0e-202 707.2 450 75.8
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.8e-201 706.1 450 75.6
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.5e-200 703.0 450 75.3
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 2.0e-200 702.6 450 74.4
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 2.6e-200 702.2 438 75.8
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 3.4e-200 701.8 458 73.6
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.4e-200 701.4 450 74.9
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.8e-200 701.0 450 74.9
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.3e-199 699.9 453 73.3
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 5.4e-198 694.5 450 74.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 1.2e-197 693.3 459 71.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 4.6e-197 691.4 458 71.8
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 6.0e-197 691.0 450 73.3
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 7.8e-197 690.6 458 72.5
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.7e-196 689.5 436 74.1
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.9e-196 688.3 450 73.3
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.2e-194 683.3 450 73.3
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 2.1e-194 682.6 453 72.4
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.1e-193 680.2 458 71.2
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 3.1e-193 678.7 454 72.7
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 4.0e-193 678.3 458 71.6
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.7e-191 672.9 456 72.1
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 2.2e-191 672.5 457 72.2
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.9e-190 669.5 458 71.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 5.4e-190 667.9 454 71.6
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 5.4e-190 667.9 435 73.3
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 7.1e-190 667.5 460 69.8
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 1.2e-189 666.8 456 69.7
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.2e-189 666.8 454 71.6
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.6e-189 666.4 439 73.1
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 2.1e-189 666.0 454 71.6
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.7e-189 665.6 441 72.8
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 4.6e-189 664.8 438 71.7
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 6.6e-188 661.0 450 71.3
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 1.9e-187 659.4 457 69.4
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 2.5e-187 659.1 456 69.3
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 4.3e-187 658.3 402 77.9
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 8.1e-186 654.1 412 76.2
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 3.1e-185 652.1 457 69.4
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 4.0e-185 651.7 457 69.8
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.5e-184 649.8 455 69.5
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 2.0e-184 649.4 457 69.1
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 4.4e-184 648.3 455 69.2
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 5.8e-184 647.9 456 68.9
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.3e-183 646.7 453 69.5
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 2.7e-181 639.0 457 68.9
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 3.5e-181 638.6 514 62.3
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.3e-180 636.7 453 68.7
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 3.0e-180 635.6 456 68.6
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 1.9e-179 632.9 419 72.8
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.2e-178 630.2 459 66.4
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 3.6e-178 628.6 453 67.5
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.1e-177 627.1 450 67.6
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.0e-176 622.9 456 67.5
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.7e-175 619.8 436 70.6
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.4e-174 616.7 455 66.6
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 3.2e-174 615.5 455 65.1
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.2e-173 613.6 411 71.3
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 6.0e-173 611.3 454 67.8
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 7.8e-173 610.9 453 66.9
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.7e-172 609.8 453 67.5
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 2.3e-172 609.4 483 63.6
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 3.9e-172 608.6 453 67.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 6.6e-172 607.8 454 67.0
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.5e-171 606.7 454 65.2
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 5.8e-168 594.7 456 64.5
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.4e-166 590.1 457 63.2
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.4e-166 589.3 384 72.9
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 4.2e-166 588.6 455 65.5
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 1.6e-165 586.6 382 73.8
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 3.0e-164 582.4 453 65.1
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.1e-163 580.5 408 69.1
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 5.6e-163 578.2 453 62.9
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 8.7e-148 527.7 372 69.1
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 2.7e-141 506.1 371 69.3
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.4e-129 467.2 458 50.2
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 3.3e-123 446.0 458 55.0
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 3.3e-123 446.0 464 47.6
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 7.4e-123 444.9 341 66.3
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.8e-121 440.3 298 71.8
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 5.5e-118 428.7 455 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.4e-118 427.9 455 47.9
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 7.7e-112 408.3 311 65.9
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 6.1e-101 372.1 387 51.4
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 6.1e-101 372.1 515 39.8
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.4e-89 334.3 462 41.6
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-85 320.9 244 68.4
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 6.4e-74 282.3 209 60.8
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.9e-70 270.8 224 57.6
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 5.6e-70 269.2 441 36.7
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.4e-65 254.6 186 65.6
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 8.7e-39 165.6 467 29.6
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 8.2e-37 159.1 107 68.2
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 3.1e-36 157.1 305 32.8
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 3.4e-19 100.5 124 39.5
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.2e-08 65.5 337 21.1
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 4.7e-08 63.5 337 22.8
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 6.1e-08 63.2 331 23.0
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 5.2e-07 60.1 125 28.8
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 5.2e-07 60.1 129 25.6
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 6.7e-07 59.7 125 28.0
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 343 21.3
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.0e-06 58.2 214 25.2
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 2.6e-06 57.8 125 27.2
FAN17G1253 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.6e-06 57.8 329 23.1
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 2.6e-06 57.8 129 26.4
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 3.3e-06 57.4 297 22.9
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 3.3e-06 57.4 386 20.2
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 4.4e-06 57.0 129 24.8
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 4.4e-06 57.0 129 24.8
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 5.7e-06 56.6 117 26.5
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 5.7e-06 56.6 286 22.7
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 5.7e-06 56.6 286 22.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 5.7e-06 56.6 133 26.3
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 5.7e-06 56.6 274 24.5
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 7.4e-06 56.2 117 26.5
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 7.4e-06 56.2 187 25.1
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 7.4e-06 56.2 289 21.8
TAR383G0657 Trochodendron aralioides HOM05D003006 ORTHO05D003438 7.4e-06 56.2 195 25.6
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 7.4e-06 56.2 118 27.1
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 9.7e-06 55.8 202 24.3
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 9.7e-06 55.8 130 27.7
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 9.7e-06 55.8 278 23.4


User provided reference genes

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