Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 0.0e+00 1374.4 711 100.0
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 0.0e+00 1346.6 711 97.7
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 6.1e-281 970.7 713 72.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.2e-269 931.8 714 69.3
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 8.0e-265 917.1 714 68.8
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 5.2e-264 914.4 716 69.0
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.7e-262 909.4 716 68.7
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 6.6e-259 897.5 713 67.5
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 8.6e-259 897.1 713 67.3
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.5e-258 896.3 727 67.4
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 9.5e-258 893.6 727 66.4
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 3.2e-253 878.6 713 66.8
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 3.0e-251 872.1 711 66.7
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 6.8e-248 860.9 713 64.9
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.6e-201 706.8 717 56.2
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 4.5e-199 698.7 730 54.5
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.9e-199 698.4 711 55.1
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 1.9e-197 693.3 712 54.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.2e-196 690.6 711 54.4
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 2.4e-192 676.4 743 52.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 9.1e-192 674.5 714 53.2
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.5e-189 666.4 720 53.2
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.2e-189 666.0 711 54.0
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 2.3e-187 659.8 712 54.1
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 3.9e-187 659.1 711 52.5
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.7e-187 658.3 718 52.1
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.0e-182 644.4 761 50.1
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.7e-182 643.7 723 52.6
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.1e-181 641.0 720 52.4
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.5e-181 640.6 771 48.9
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 2.7e-180 636.3 713 52.2
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 8.8e-179 631.3 712 51.0
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.4e-178 629.0 723 52.8
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.3e-177 627.5 774 49.0
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 4.8e-177 625.5 718 51.0
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.8e-176 623.6 712 50.8
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.4e-176 623.2 725 52.6
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.5e-175 619.0 736 50.3
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.9e-174 616.3 685 51.8
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 3.8e-174 615.9 697 51.5
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 7.2e-173 611.7 718 49.9
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.8e-171 607.1 744 48.4
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.2e-170 604.4 765 47.5
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 5.7e-170 602.1 819 45.8
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 7.5e-170 601.7 752 49.3
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 9.8e-170 601.3 761 48.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 9.8e-170 601.3 714 50.3
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 3.1e-168 596.3 707 48.9
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 5.4e-168 595.5 730 49.3
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.5e-167 592.8 718 49.3
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 2.9e-166 589.7 718 47.8
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.9e-166 589.7 712 49.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 8.5e-166 588.2 720 49.2
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.5e-165 586.6 725 50.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.2e-165 586.3 717 48.8
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.2e-165 585.9 779 46.7
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.6e-164 583.9 743 47.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.7e-164 583.2 719 49.0
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 3.6e-164 582.8 735 47.6
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.0e-162 577.0 775 47.5
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 2.6e-162 576.6 714 48.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.4e-162 575.9 713 47.7
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 4.9e-161 572.4 721 47.9
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 3.1e-160 569.7 719 48.0
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 3.8e-158 562.8 715 47.1
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.5e-157 560.8 758 46.4
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 7.3e-157 558.5 775 46.2
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-156 557.4 775 46.1
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 6.1e-156 555.4 761 46.0
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.9e-153 546.6 717 46.0
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.4e-152 544.3 681 50.5
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 9.2e-152 541.6 721 45.5
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.0e-151 540.4 718 45.4
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.3e-150 537.0 776 44.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.4e-147 527.7 739 44.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.5e-146 524.2 740 43.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 7.5e-146 521.9 747 43.1
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 9.8e-146 521.5 659 48.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 3.7e-145 519.6 715 45.3
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.7e-145 519.6 709 45.3
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.1e-144 518.1 619 49.6
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.4e-144 517.7 771 42.5
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 3.2e-144 516.5 735 44.2
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 3.3e-141 506.5 860 39.0
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 3.1e-139 500.0 759 43.0
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-138 497.7 749 44.9
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 9.8e-138 495.0 745 42.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.5e-133 480.3 698 42.8
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 3.3e-133 479.9 727 43.1
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.4e-128 463.8 717 40.7
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 6.0e-127 459.1 700 41.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.6e-126 455.7 750 42.1
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 3.3e-125 453.4 830 39.3
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.8e-123 447.6 674 43.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.1e-123 446.8 837 38.1
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.7e-121 441.0 861 37.6
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.9e-120 437.6 855 37.3
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.5e-119 433.3 542 50.2
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.7e-118 431.0 524 49.2
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 9.0e-115 418.7 709 39.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 2.1e-111 407.5 706 38.8
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.3e-110 404.1 828 37.6
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 4.8e-100 369.8 733 37.7
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.1e-88 332.0 725 34.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-88 331.6 726 33.3
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.5e-85 320.9 719 33.5
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.0e-82 311.2 699 34.3
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.2e-76 291.2 716 34.2
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 2.8e-76 290.8 288 56.6
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 5.9e-74 283.1 758 30.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 9.4e-72 275.8 651 34.9
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.5e-65 253.1 374 42.0
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.3e-62 244.6 274 48.2
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.1e-59 235.7 890 27.4
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 3.0e-54 217.6 711 29.0
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 6.3e-52 209.9 691 30.4
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 8.3e-52 209.5 320 42.2
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 8.3e-52 209.5 200 53.5
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.2e-45 189.1 721 27.0
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 4.5e-42 177.2 176 50.0
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 4.5e-42 177.2 176 50.0
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.9e-36 157.9 126 62.7
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.1e-35 156.0 405 29.6
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 5.0e-33 147.1 136 58.1
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-32 146.0 179 45.3
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.6e-26 124.0 82 68.3
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 1.5e-24 119.0 216 44.4
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 2.5e-24 118.2 188 42.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 9.8e-21 106.3 102 52.9
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.9e-20 104.0 95 57.9
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 3.0e-17 94.7 123 43.9
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 2.8e-15 88.2 113 44.2
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.7e-12 79.0 160 38.8
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 3.0e-09 68.2 54 61.1


User provided reference genes

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