Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 0.0e+00 1104.0 556 100.0
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 0.0e+00 1076.2 556 97.3
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 8.6e-230 800.4 556 73.6
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 9.2e-224 780.4 562 72.2
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.3e-222 776.5 564 71.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 3.0e-222 775.4 562 70.8
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 8.6e-222 773.9 562 70.8
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 5.8e-218 761.1 573 68.4
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.3e-217 760.0 561 70.1
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 8.3e-217 757.3 553 69.3
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 1.5e-210 736.5 579 66.1
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.7e-177 626.7 454 70.5
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.4e-168 597.0 555 56.9
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 6.0e-167 591.7 545 58.2
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 5.3e-163 578.6 587 54.5
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 3.4e-162 575.9 555 54.6
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 6.1e-159 565.1 530 57.5
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 3.0e-158 562.8 555 55.7
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 2.5e-157 559.7 555 54.4
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 2.2e-156 556.6 559 53.8
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.1e-155 554.3 701 47.1
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 7.7e-154 548.1 555 53.9
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 2.5e-152 543.1 555 54.4
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 1.6e-151 540.4 572 53.1
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.6e-151 540.4 608 50.3
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 5.3e-147 525.4 567 50.8
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 3.4e-146 522.7 559 52.2
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 3.4e-146 522.7 556 52.5
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 1.4e-144 517.3 557 51.7
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 3.2e-144 516.2 580 51.0
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.2e-143 514.2 554 50.7
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 9.7e-141 504.6 542 51.3
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.1e-139 501.1 575 49.7
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.1e-139 501.1 555 50.6
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 1.4e-139 500.7 556 48.6
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 7.0e-139 498.4 559 48.3
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.3e-137 494.2 554 48.9
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 1.7e-137 493.8 572 48.4
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 1.5e-136 490.7 560 47.9
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 2.7e-135 486.5 568 48.9
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 4.7e-135 485.7 562 47.7
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.4e-134 484.2 568 47.5
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 2.0e-133 480.3 565 49.7
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 1.3e-132 477.6 589 48.6
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 4.8e-132 475.7 562 47.2
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.1e-131 474.6 560 47.3
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.4e-131 473.4 568 47.7
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.7e-130 469.9 553 47.7
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.2e-129 466.8 564 46.6
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 6.5e-129 465.3 557 45.6
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.1e-128 464.5 578 46.5
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 4.2e-128 462.6 544 48.3
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.2e-127 461.1 574 47.9
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 2.1e-127 460.3 557 46.5
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 1.8e-126 457.2 562 47.7
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 7.5e-125 451.8 553 45.8
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 9.8e-125 451.4 598 44.1
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 1.4e-123 447.6 553 46.8
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 2.0e-122 443.7 561 45.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.7e-122 443.4 678 41.4
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 2.7e-122 443.4 528 48.7
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 2.9e-121 439.9 566 44.2
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.8e-121 439.5 592 43.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.8e-121 439.5 581 45.4
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.1e-120 438.0 560 45.0
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 5.5e-120 435.6 559 45.6
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.6e-119 434.1 557 45.2
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.8e-118 430.6 557 43.4
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.8e-118 430.6 530 47.9
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 1.5e-117 427.6 541 44.9
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 3.4e-117 426.4 558 43.2
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 3.4e-117 426.4 486 50.6
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 9.8e-117 424.9 502 49.2
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.8e-115 420.6 524 46.2
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 5.4e-115 419.1 560 43.6
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 9.2e-115 418.3 559 41.9
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 1.0e-113 414.8 560 43.2
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 2.5e-112 410.2 508 47.2
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 2.8e-111 406.8 559 42.6
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 1.8e-110 404.1 536 45.1
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 2.0e-109 400.6 564 43.6
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 4.1e-107 392.9 546 42.3
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 2.8e-103 380.2 588 42.2
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 2.2e-100 370.5 506 44.1
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 2.4e-99 367.1 491 45.0
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.7e-97 360.9 555 37.7
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.7e-92 344.4 562 38.1
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.3e-89 334.0 415 47.0
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 8.6e-89 332.0 561 38.1
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 3.6e-87 326.6 416 48.1
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 1.1e-86 325.1 334 49.1
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 1.9e-83 314.3 502 38.4
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 9.0e-78 295.4 594 35.2
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.3e-76 291.6 493 38.9
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.4e-75 287.3 441 42.0
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 3.2e-75 287.0 349 46.4
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-68 264.6 422 41.0
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 5.4e-67 259.6 479 37.6
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.0e-65 253.8 207 60.4
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 5.1e-65 253.1 413 39.5
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 1.3e-63 248.4 545 31.9
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 2.7e-58 230.7 361 42.7
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.3e-57 228.4 208 56.7
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 3.0e-57 227.3 190 55.8
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.3e-47 195.3 148 62.2
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.8e-47 193.4 148 62.2
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 9.0e-46 189.1 324 40.7
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 4.3e-40 170.2 602 29.1
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 9.7e-40 169.1 119 69.7
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.4e-38 164.5 140 59.3
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.6e-37 161.0 119 63.9
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 6.5e-36 156.4 224 44.6
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 2.9e-28 131.0 606 25.9
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 8.5e-28 129.4 159 45.9
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.4e-17 95.5 79 64.6
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.6e-16 91.3 70 61.4
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 2.2e-15 88.2 200 31.5
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.6e-10 72.0 62 51.6
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.1e-10 71.6 65 52.3
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.7e-07 62.0 62 54.8
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 4.1e-06 57.4 30 80.0


User provided reference genes

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