Gene: Solyc02g081520.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g081520.3
  • Transcript Identifier Solyc02g081520.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 43433593-43445949 : negative

Gene Family Information

  • ID HOM05D006560
  • #Genes/#Species 122/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g081520.3.1
  • uniprot A0A3Q7F7N9
  • gene_id Solyc02g081520

Descriptions

  • Description Nijmegen breakage syndrome 1 (AHRD V3.3 *** A0A2U1MCL4_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006312
ISO
PLAZA Integrative Orthologymitotic recombination AT3G02680
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT3G02680
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT3G02680
GO:0071479
ISO
PLAZA Integrative Orthologycellular response to ionizing radiation AT3G02680
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT3G02680
GO:0000724
IBA
GOA Databasedouble-strand break repair via homologous recombination
GO:0032508
IBA
GOA DatabaseDNA duplex unwinding
GO:0007095
IBA
IEA
GOA Databasemitotic G2 DNA damage checkpoint signaling
GO:0007095
IEA
InterPromitotic G2 DNA damage checkpoint signaling
GO:0006302
IEA
GOA Databasedouble-strand break repair
GO:0006302
IEA
InterProdouble-strand break repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IBA
GOA Databasedamaged DNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030870
IBA
IEA
GOA DatabaseMre11 complex
GO:0030870
IEA
InterProMre11 complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000253 Forkhead-associated (FHA) domain
IPR008984 SMAD/FHA domain superfamily
IPR001357 BRCT domain
IPR036420 BRCT domain superfamily
IPR040227 Nibrin-related
Mapman id Description
13.3.5.3.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component NBS1
14.3.3.3 DNA damage response.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.component NBS1