Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 2439.1 1217 100.0
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 2218.4 1166 95.1
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1771.5 1091 79.7
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1767.7 1084 81.4
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1765.4 1094 79.9
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1754.2 1073 81.2
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1733.8 1080 78.8
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1726.1 1107 76.9
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1703.0 1081 77.4
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1568.9 1104 70.9
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1560.0 1093 71.3
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1546.9 1056 72.2
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1536.5 1087 70.7
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1525.4 1083 70.4
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1515.7 1064 70.5
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1506.9 1092 68.8
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1506.5 1058 70.8
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1505.7 1083 69.3
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1500.0 1059 69.2
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1487.6 1091 68.5
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1481.1 1083 68.3
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1478.8 1116 66.9
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1476.8 1087 68.2
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1473.0 1089 67.9
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1470.7 1076 69.1
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1468.0 1079 68.2
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1463.4 1084 67.3
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1458.7 1082 68.0
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1458.0 1087 66.1
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1454.5 1093 67.4
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1448.7 1080 67.5
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1445.3 1069 67.3
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1443.7 1095 66.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1436.4 1122 64.5
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1434.5 1081 67.3
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1427.9 869 80.0
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1421.4 1077 67.1
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1421.0 1072 67.3
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1419.1 1145 63.3
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1419.1 1082 66.0
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1411.0 1085 65.5
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1408.7 1086 65.1
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1406.0 1102 65.3
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1404.0 1085 65.2
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1403.7 1134 63.8
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1402.1 1084 66.1
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1400.2 1084 65.9
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1397.5 995 69.8
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1396.3 1085 64.6
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1395.9 1185 61.9
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1395.6 1091 65.3
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1394.4 1085 65.4
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1385.9 1083 65.6
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1381.7 1095 64.6
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1379.0 1085 64.4
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1378.2 1160 61.4
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1375.5 1060 66.2
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1374.4 1092 64.3
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1374.0 1123 63.4
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1362.4 1043 65.5
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1362.1 1080 62.9
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1350.1 1019 65.8
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1348.6 1062 63.4
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1343.9 1052 64.7
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1342.8 1070 63.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1342.4 1065 64.1
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1333.2 1076 64.3
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1326.2 1070 62.1
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1324.7 1088 61.9
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1309.3 1178 57.6
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1307.7 1059 62.8
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1307.7 1057 63.3
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1293.1 861 72.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1291.2 1051 63.3
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1291.2 1098 61.2
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1281.9 862 71.9
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1270.8 1109 59.5
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1267.3 1058 62.2
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1254.2 857 70.7
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1249.6 1089 59.3
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1245.3 1087 59.0
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1240.3 827 72.3
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1218.0 815 71.4
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1216.4 861 68.6
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1214.1 1042 60.4
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1211.1 819 71.9
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1198.7 991 63.1
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1197.6 1191 54.4
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1193.7 1024 60.9
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1193.7 930 64.9
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1191.8 1000 62.8
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1173.7 863 66.7
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1164.4 1092 56.4
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1157.1 825 68.1
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1113.6 1052 54.9
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1101.7 1083 55.3
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1078.2 827 64.9
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.5e-300 1035.4 700 72.3
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.7e-299 1033.1 706 73.7
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.6e-284 983.4 898 57.1
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.3e-256 889.8 581 73.1
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 4.4e-255 885.6 943 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 6.4e-254 881.7 1059 45.1
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.1e-248 864.4 641 66.8
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 4.6e-244 849.0 972 46.7
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.3e-209 734.6 951 43.2
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.1e-200 704.9 523 68.5
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 3.2e-189 666.8 536 64.9
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.0e-183 647.5 381 83.2
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.1e-144 518.8 475 57.1
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.7e-142 511.5 1040 34.3
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.7e-129 468.4 398 62.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 9.9e-122 442.6 318 67.6
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.8e-116 423.7 389 55.0
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.1e-87 328.6 245 65.7
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 3.1e-83 314.7 207 77.3
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.6e-74 285.8 296 51.7
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-70 271.9 225 64.0
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-66 258.8 233 58.8
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 9.8e-61 240.0 160 73.8
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 8.3e-60 236.9 214 60.3
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 6.6e-57 227.3 174 65.5
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-51 209.9 182 61.5
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 5.6e-48 197.6 211 54.0
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.7e-47 194.5 194 57.2
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.0e-42 179.1 129 65.9
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 4.7e-39 167.9 162 53.7
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 6.2e-39 167.5 174 55.2
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 2.3e-38 165.6 184 51.1
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.4e-36 157.5 155 51.0
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 2.7e-34 152.1 170 49.4
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 1.3e-33 149.8 91 76.9
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.9e-32 146.0 207 44.4
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-31 143.3 100 65.0
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.2e-31 143.3 154 53.2
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.8e-31 142.1 102 62.7
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 4.0e-30 138.3 174 50.6
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 9.9e-29 133.7 95 71.6
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 1.0e-25 123.6 99 59.6
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.0e-25 122.1 88 64.8
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 9.6e-24 117.1 88 64.8
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 8.1e-23 114.0 171 40.9
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 8.9e-22 110.5 84 66.7
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 1.2e-21 110.2 537 24.4
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 1.7e-20 106.3 140 47.9
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-19 103.2 100 50.0
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.1e-17 94.7 93 49.5
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 3.3e-16 92.0 73 58.9
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.3e-15 90.1 371 27.2
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.2e-11 75.5 139 36.7
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 9.3e-11 73.9 70 55.7
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 1.6e-10 73.2 175 30.9
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 5.1e-09 68.2 120 40.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 8.7e-09 67.4 53 60.4
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.5e-08 66.6 40 77.5
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 4.3e-08 65.1 59 59.3
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.6e-07 62.0 39 74.4
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 6.2e-07 61.2 43 67.4
SEGI_26020 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.0e-06 58.5 175 28.6
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 9.0e-06 57.4 96 39.6


User provided reference genes

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