Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.R2J7CI Arachis hypogaea HOM05D005767 ORTHO05D006785 2.9e-23 110.9 52 100.0
arahy.Tifrunner.gnm1.ann1.S1GY7D Arachis hypogaea HOM05D005767 ORTHO05D006785 3.2e-22 107.5 52 96.2
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 2.9e-15 84.3 42 90.5
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 2.9e-15 84.3 42 90.5
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 2.7e-13 77.8 41 78.0
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 6.1e-13 76.6 41 78.0
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 8.0e-13 76.3 41 75.6
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 8.0e-13 76.3 41 80.5
Psat7g239040 Pisum sativum HOM05D005767 ORTHO05D006785 1.0e-12 75.9 41 80.5
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 1.0e-12 75.9 41 78.0
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 1.8e-12 75.1 41 78.0
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 2.3e-12 74.7 41 75.6
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 4.0e-12 73.9 41 75.6
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 5.2e-12 73.6 41 75.6
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 5.2e-12 73.6 41 75.6
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 6.8e-12 73.2 41 73.2
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 8.8e-12 72.8 41 75.6
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 8.8e-12 72.8 41 73.2
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 8.8e-12 72.8 41 75.6
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 1.2e-11 72.4 41 75.6
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 1.2e-11 72.4 38 81.6
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 1.2e-11 72.4 41 73.2
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 1.5e-11 72.0 41 75.6
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 1.5e-11 72.0 41 73.2
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 1.5e-11 72.0 41 73.2
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 1.5e-11 72.0 41 73.2
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 1.5e-11 72.0 41 73.2
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 1.5e-11 72.0 41 73.2
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 1.5e-11 72.0 43 69.8
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 2.6e-11 71.2 41 68.3
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 2.6e-11 71.2 40 70.0
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 2.6e-11 71.2 41 73.2
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 2.6e-11 71.2 41 73.2
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 2.6e-11 71.2 41 73.2
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 2.6e-11 71.2 41 75.6
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 3.4e-11 70.9 41 70.7
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.4e-11 70.9 41 70.7
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.4e-11 70.9 41 70.7
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 3.4e-11 70.9 41 70.7
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 4.4e-11 70.5 40 67.5
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 5.7e-11 70.1 40 72.5
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 5.7e-11 70.1 40 72.5
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 5.7e-11 70.1 41 73.2
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 5.7e-11 70.1 41 68.3
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 5.7e-11 70.1 41 68.3
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 5.7e-11 70.1 41 68.3
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 7.5e-11 69.7 42 64.3
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 7.5e-11 69.7 42 64.3
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 7.5e-11 69.7 39 71.8
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 7.5e-11 69.7 40 70.0
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 7.5e-11 69.7 41 70.7
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 9.8e-11 69.3 41 73.2
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 9.8e-11 69.3 41 68.3
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 9.8e-11 69.3 41 70.7
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 9.8e-11 69.3 39 69.2
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 65.9
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 65.9
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 65.9
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 65.9
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 65.9
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 68.3
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 1.3e-10 68.9 41 68.3
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 1.7e-10 68.6 41 63.4
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 1.7e-10 68.6 39 71.8
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 1.7e-10 68.6 41 70.7
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 2.2e-10 68.2 42 61.9
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 2.8e-10 67.8 40 70.0
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 2.8e-10 67.8 41 70.7
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 3.7e-10 67.4 41 63.4
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 6.3e-10 66.6 42 59.5
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 6.3e-10 66.6 39 71.8
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 8.3e-10 66.2 39 66.7
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 8.3e-10 66.2 40 70.0
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 1.1e-09 65.9 39 66.7
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 1.4e-09 65.5 42 66.7
arahy.Tifrunner.gnm1.ann1.JHI6E6 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.8e-09 65.1 32 90.6
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 2.4e-09 64.7 41 65.9
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 2.4e-09 64.7 41 63.4
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 3.1e-09 64.3 41 61.0
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 5.4e-09 63.5 39 64.1
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 1.2e-08 62.4 41 63.4
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 1.6e-08 62.0 41 58.5
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 3.5e-08 60.8 43 55.8
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 5.9e-08 60.1 39 66.7
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 5.9e-08 60.1 39 66.7
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 2.2e-07 58.2 39 61.5
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 2.2e-07 58.2 42 61.9
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 1.1e-06 55.8 30 80.0
SMO356G0427 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.1e-06 55.8 39 61.5
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.1e-06 55.8 39 56.4
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 1.5e-06 55.5 30 80.0
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 2.5e-06 54.7 33 66.7
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 3.2e-06 54.3 39 56.4
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 3.2e-06 54.3 56 46.4


User provided reference genes

Program Settings