Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 4.5e-55 217.6 105 100.0
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 4.6e-52 207.6 103 96.1
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 1.1e-50 203.0 103 93.2
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 3.3e-50 201.4 103 94.2
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 3.8e-38 161.4 97 74.2
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.6e-36 156.0 99 70.7
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.7e-33 146.0 96 71.9
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 2.8e-33 145.2 94 74.5
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 4.8e-33 144.4 95 72.6
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 3.1e-32 141.7 95 71.6
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 4.1e-32 141.4 95 70.5
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 4.1e-32 141.4 103 65.0
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.2e-31 139.8 99 66.7
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 2.6e-31 138.7 93 69.9
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 3.5e-31 138.3 91 68.1
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.5e-31 138.3 96 67.7
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 3.5e-31 138.3 101 65.3
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 4.5e-31 137.9 104 63.5
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 5.9e-31 137.5 93 68.8
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 5.9e-31 137.5 100 66.0
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 7.7e-31 137.1 93 68.8
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.3e-30 136.3 92 69.6
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.7e-30 136.0 93 69.9
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.7e-30 136.0 92 71.7
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.7e-30 136.0 91 71.4
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.2e-30 135.6 93 68.8
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 2.2e-30 135.6 99 64.6
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 2.2e-30 135.6 99 64.6
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.2e-30 135.6 102 60.8
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.9e-30 135.2 92 68.5
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 5.0e-30 134.4 93 71.0
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 5.0e-30 134.4 97 64.9
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 6.5e-30 134.0 95 68.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 6.5e-30 134.0 93 69.9
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 8.5e-30 133.7 91 69.2
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 8.5e-30 133.7 98 63.3
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.1e-29 133.3 95 67.4
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.1e-29 133.3 95 67.4
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 1.5e-29 132.9 92 67.4
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.9e-29 132.5 99 64.6
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.9e-29 132.5 99 64.6
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.9e-29 132.5 91 71.4
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 2.5e-29 132.1 93 67.7
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.5e-29 132.1 93 67.7
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.5e-29 132.1 92 67.4
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.5e-29 132.1 92 67.4
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 2.5e-29 132.1 94 62.8
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 3.2e-29 131.7 99 63.6
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 4.2e-29 131.3 94 66.0
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 4.2e-29 131.3 93 67.7
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 5.5e-29 131.0 97 64.9
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 5.5e-29 131.0 90 68.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 5.5e-29 131.0 93 66.7
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 5.5e-29 131.0 94 64.9
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 7.2e-29 130.6 94 63.8
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.2e-29 130.6 100 64.0
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 9.4e-29 130.2 97 63.9
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.2e-28 129.8 93 69.9
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.6e-28 129.4 100 63.0
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.6e-28 129.4 100 63.0
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 2.1e-28 129.0 94 66.0
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 2.7e-28 128.6 94 62.8
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 2.7e-28 128.6 90 66.7
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.7e-28 128.6 90 66.7
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 3.6e-28 128.3 99 63.6
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 3.6e-28 128.3 87 67.8
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 3.6e-28 128.3 93 67.7
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 4.7e-28 127.9 101 61.4
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 6.1e-28 127.5 97 63.9
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 6.1e-28 127.5 90 66.7
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 6.1e-28 127.5 93 66.7
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.4e-27 126.3 95 62.1
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.4e-27 126.3 104 57.7
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.8e-27 125.9 92 64.1
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.8e-27 125.9 97 62.9
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.8e-27 125.9 102 62.7
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 4.0e-27 124.8 90 66.7
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 4.0e-27 124.8 93 63.4
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 6.7e-27 124.0 97 62.9
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 8.8e-27 123.6 92 64.1
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 1.5e-26 122.9 93 63.4
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 1.5e-26 122.9 92 62.0
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 3.3e-26 121.7 95 62.1
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 3.3e-26 121.7 95 61.1
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.3e-25 119.8 126 49.2
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.7e-25 119.4 95 62.1
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.7e-25 119.4 95 60.0
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 2.8e-25 118.6 96 60.4
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 7.0e-24 114.0 79 65.8
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.7e-23 112.1 123 49.6
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.0e-22 110.2 94 55.3
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.3e-22 109.8 99 55.6
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.7e-22 109.4 70 71.4
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.9e-21 105.9 109 56.0
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.2e-21 105.1 100 56.0
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 2.1e-20 102.4 89 57.3
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 8.0e-20 100.5 103 50.5
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 2.3e-19 99.0 96 55.2
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 6.3e-17 90.9 102 49.0
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.8e-16 89.4 100 46.0
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 7.0e-16 87.4 96 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 7.7e-15 84.0 105 40.0
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 2.2e-14 82.4 73 61.6
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 6.1e-12 74.3 76 53.9
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.4e-11 73.2 59 61.0
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 5.2e-11 71.2 76 52.6
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 5.2e-11 71.2 76 52.6
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 7.5e-10 67.4 32 84.4
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 3.7e-09 65.1 34 76.5
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 3.1e-08 62.0 56 50.0
Cre14.g633400 Chlamydomonas reinhardtii HOM05D006136 ORTHO05D007244 5.4e-08 61.2 114 34.2
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.8e-06 55.1 31 67.7


User provided reference genes

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