Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 0.0e+00 1387.5 676 100.0
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 0.0e+00 1376.3 676 99.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1147.1 685 81.9
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1146.0 671 83.0
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 0.0e+00 1145.6 712 79.9
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 0.0e+00 1135.6 702 79.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 0.0e+00 1128.6 682 80.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 0.0e+00 1110.1 619 84.8
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 0.0e+00 1102.4 639 82.6
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 0.0e+00 1094.0 623 82.5
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 0.0e+00 1081.2 683 75.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 4.7e-299 1030.8 693 73.4
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.5e-297 1025.8 651 75.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 4.4e-297 1024.2 661 74.6
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.3e-296 1022.7 702 71.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 3.8e-296 1021.1 642 75.7
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.4e-295 1019.2 673 73.6
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.9e-295 1018.8 642 74.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 5.4e-295 1017.3 642 74.8
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.6e-294 1015.8 652 74.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.7e-294 1015.0 642 74.5
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 4.3e-292 1007.7 621 76.5
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 7.3e-292 1006.9 617 76.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 9.6e-292 1006.5 701 70.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.2e-291 1006.1 690 71.7
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 4.9e-288 994.2 619 74.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 8.4e-288 993.4 658 72.6
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.4e-287 991.9 610 76.2
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.2e-287 991.5 711 69.2
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 3.2e-287 991.5 707 69.9
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.2e-287 991.1 645 73.2
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 9.3e-287 989.9 619 74.3
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.1e-286 988.8 684 70.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 3.9e-285 984.6 623 73.5
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.1e-284 983.0 695 68.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.3e-283 979.5 671 71.8
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.1e-283 978.8 696 68.4
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.1e-283 978.8 695 68.6
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 3.6e-283 978.0 687 69.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.4e-282 976.1 614 74.4
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.8e-282 975.7 623 73.7
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.2e-281 973.0 691 69.3
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.5e-281 972.6 638 72.4
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 8.4e-280 966.8 700 67.9
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.1e-279 966.5 669 72.0
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.4e-279 965.3 619 73.2
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.4e-279 964.1 702 68.2
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 9.3e-279 963.4 638 73.7
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.2e-278 963.0 711 67.2
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.5e-276 956.1 670 70.7
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 7.4e-276 953.7 648 69.8
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 4.8e-275 951.0 695 68.2
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.8e-274 949.1 678 70.1
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 2.0e-273 945.7 690 67.1
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-272 942.6 619 72.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.8e-272 941.4 618 72.8
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 7.1e-271 937.2 699 66.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 6.0e-270 934.1 718 66.2
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.3e-269 932.9 601 73.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.8e-269 932.6 610 71.6
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 6.7e-269 930.6 697 67.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 6.7e-269 930.6 697 67.6
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.1e-268 929.9 676 69.1
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-267 925.6 708 66.0
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 3.7e-267 924.9 719 65.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 4.0e-266 921.4 626 71.2
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 5.3e-266 921.0 685 67.2
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.5e-265 919.5 625 70.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 2.6e-265 918.7 663 67.4
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 3.4e-265 918.3 707 65.6
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.4e-265 918.3 687 66.8
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 4.5e-265 917.9 626 70.9
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 4.5e-265 917.9 723 63.9
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 5.8e-265 917.5 713 64.0
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-263 913.3 707 65.6
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.0e-261 906.7 625 69.6
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.0e-261 905.2 727 62.9
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-260 903.3 707 64.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.5e-260 902.1 633 68.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 9.7e-260 900.2 699 65.5
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 9.7e-260 900.2 619 69.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.6e-259 899.4 619 69.1
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 8.2e-259 897.1 682 64.1
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.0e-256 890.2 564 74.1
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 5.0e-256 887.9 622 68.2
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.0e-253 878.6 680 65.6
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.1e-250 870.2 741 60.3
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.4e-250 869.0 677 61.7
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 6.9e-250 867.5 645 65.9
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 9.1e-250 867.1 695 64.7
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.2e-249 866.7 750 59.5
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.8e-248 861.7 653 67.4
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.5e-247 859.0 671 63.9
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 9.4e-247 857.1 642 65.1
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.7e-246 855.5 539 73.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 7.9e-246 854.0 608 67.8
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.0e-244 849.4 658 65.8
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.4e-244 848.2 640 65.0
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.4e-242 843.2 705 60.6
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.8e-242 842.8 644 65.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.1e-236 823.5 600 68.8
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.0e-236 822.8 673 63.4
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.9e-232 808.9 629 64.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.1e-230 801.2 676 61.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 9.7e-228 793.9 620 63.1
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 5.0e-224 781.6 507 77.7
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 3.2e-223 778.9 637 58.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.4e-221 773.5 666 57.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 8.8e-221 770.8 682 59.2
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.0e-220 769.6 695 59.0
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 3.3e-215 752.3 666 55.6
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.2e-214 750.4 610 59.8
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 8.9e-213 744.2 518 70.3
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.0e-212 743.0 553 65.8
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 4.7e-206 721.8 684 53.5
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.2e-195 686.4 692 54.3
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.6e-190 670.2 627 55.8
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.7e-190 668.7 565 60.9
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.0e-188 663.3 456 71.1
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.4e-188 662.5 666 53.8
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 5.8e-188 661.8 490 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.1e-181 641.0 560 57.3
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 5.2e-181 638.6 494 66.6
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 3.8e-171 605.9 448 69.0
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.2e-170 602.4 440 65.9
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.3e-167 592.8 483 62.3
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.4e-165 587.4 423 65.2
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.5e-164 583.9 413 65.9
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.1e-162 575.1 413 64.4
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 3.7e-158 562.8 695 44.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.1e-149 534.6 735 39.9
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 3.9e-136 489.6 633 40.3
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 4.1e-133 479.6 694 40.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 8.8e-128 461.8 425 57.2
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.0e-125 452.2 485 52.2
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 5.0e-123 446.0 615 39.2
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.3e-117 426.0 319 64.6
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.1e-105 387.5 419 50.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.8e-101 374.4 190 91.1
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.8e-93 347.8 220 75.9
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 7.3e-90 335.9 188 79.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 3.6e-89 333.6 183 81.4
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.0e-84 316.2 169 82.2
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 8.9e-80 302.4 191 73.8
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.7e-78 297.0 185 73.0
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.9e-77 294.7 185 71.9
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 7.3e-74 282.7 185 71.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.3e-72 277.7 156 79.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.1e-64 252.3 177 70.1
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.2e-64 250.0 136 80.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-56 225.7 151 68.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 2.6e-55 221.1 154 67.5
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-51 207.6 103 87.4
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 8.7e-43 179.5 113 76.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.1e-40 172.6 84 86.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 5.8e-39 166.8 111 68.5
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.3e-35 155.6 147 55.8
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 8.7e-35 152.9 104 71.2
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-32 145.2 115 59.1
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.1e-32 144.4 79 82.3
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.3e-27 129.0 75 76.0
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 5.7e-26 123.6 72 75.0
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 4.8e-25 120.6 85 69.4
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 3.1e-24 117.9 72 73.6
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.0e-14 84.0 50 74.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.1e-10 72.8 50 68.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 3.3e-10 71.2 44 75.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 5.3e-08 63.9 43 69.8
Os04g0678300 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 3.5e-07 61.2 249 24.5
MSTRG.19087 Avicennia marina HOM05D000645 ORTHO05D000494 5.9e-07 60.5 98 32.7
Sed0015562 Sechium edule HOM05D000645 ORTHO05D000494 2.9e-06 58.2 75 34.7
MELO3C003126.2 Cucumis melo HOM05D000645 ORTHO05D000494 3.8e-06 57.8 96 32.3
Hund25080 Selenicereus undatus HOM05D001335 ORTHO05D001184 3.8e-06 57.8 57 42.1
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 5.0e-06 57.4 63 49.2
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 6.5e-06 57.0 107 28.0
Sed0016673 Sechium edule HOM05D000645 ORTHO05D000494 6.5e-06 57.0 75 33.3
CsaV3_4G024950 Cucumis sativus L. HOM05D000645 ORTHO05D000494 8.5e-06 56.6 73 37.0


User provided reference genes

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