Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 0.0e+00 1102.4 556 100.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 0.0e+00 1075.1 556 97.3
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 7.7e-231 803.9 556 73.7
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 3.7e-225 785.0 562 72.4
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 6.4e-225 784.3 566 72.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.6e-223 779.6 562 71.0
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 2.0e-223 779.2 562 71.2
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 7.3e-221 770.8 553 70.5
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.6e-220 769.6 561 70.6
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 4.7e-220 768.1 573 69.1
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 7.3e-213 744.2 579 66.8
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.5e-178 630.2 454 70.5
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.4e-168 597.0 545 58.5
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 4.2e-168 595.5 554 57.0
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 1.4e-163 580.5 555 55.1
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.8e-163 580.1 587 55.4
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 1.1e-160 570.9 535 57.4
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 1.2e-159 567.4 555 55.9
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 1.5e-157 560.5 559 53.7
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.9e-157 560.1 706 47.0
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 3.3e-157 559.3 555 54.6
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 1.8e-155 553.5 555 54.4
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 1.1e-152 544.3 555 54.8
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 9.4e-152 541.2 600 50.5
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 2.1e-151 540.0 572 53.3
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 4.8e-148 528.9 567 50.8
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 5.9e-146 521.9 556 53.2
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.3e-145 520.8 559 51.9
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 3.8e-145 519.2 557 51.5
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 2.5e-144 516.5 555 51.4
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 5.5e-144 515.4 580 51.0
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 7.4e-141 505.0 541 51.8
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 4.8e-140 502.3 579 49.7
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.2e-138 497.7 555 50.6
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 2.0e-138 496.9 557 48.3
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 4.5e-138 495.7 554 49.1
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 4.5e-138 495.7 559 48.1
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 2.9e-137 493.0 572 48.6
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 3.2e-136 489.6 568 47.7
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 3.2e-136 489.6 559 47.6
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 4.2e-136 489.2 569 49.4
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 7.2e-136 488.4 602 47.7
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 6.1e-135 485.3 562 47.7
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 1.2e-133 481.1 589 49.2
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.2e-133 481.1 556 47.7
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.3e-132 477.6 564 47.7
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-132 477.2 569 48.3
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 3.1e-131 473.0 553 48.5
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.0e-130 470.3 566 47.2
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 2.7e-130 469.9 556 46.0
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 3.8e-129 466.1 562 48.0
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 6.5e-129 465.3 552 47.8
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.1e-128 464.5 574 48.6
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 4.2e-128 462.6 553 47.2
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 5.5e-128 462.2 582 47.6
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 1.0e-126 458.0 553 47.4
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 1.2e-125 454.5 598 44.3
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 4.8e-124 449.1 558 46.1
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 8.3e-124 448.4 553 46.5
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 5.4e-123 445.7 581 45.6
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 2.0e-122 443.7 592 44.3
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.0e-121 441.4 556 45.3
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.0e-121 441.4 678 41.3
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 2.3e-121 440.3 528 48.5
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 7.2e-120 435.3 557 43.6
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 9.5e-120 434.9 557 45.8
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 8.0e-119 431.8 537 47.7
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 1.8e-118 430.6 564 44.1
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 2.3e-118 430.3 553 44.3
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 3.0e-118 429.9 486 51.0
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 6.8e-118 428.7 556 45.1
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 7.5e-117 425.2 556 43.3
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 7.5e-117 425.2 541 44.4
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 1.4e-115 421.0 502 48.6
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 1.8e-115 420.6 560 43.4
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 2.4e-115 420.2 524 47.1
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 2.0e-114 417.2 558 42.1
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 2.0e-114 417.2 508 47.4
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 5.0e-113 412.5 559 43.3
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 6.6e-113 412.1 538 45.7
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 8.0e-111 405.2 564 43.3
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 7.5e-109 398.7 546 42.5
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 5.6e-104 382.5 588 41.7
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 5.2e-102 375.9 506 44.1
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.1e-99 366.3 499 44.9
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.0e-97 361.7 559 37.7
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 7.5e-93 345.5 564 38.3
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.9e-88 330.9 414 47.1
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 3.3e-88 330.1 561 38.3
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 9.5e-88 328.6 430 47.7
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 2.1e-87 327.4 334 48.8
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 5.8e-85 319.3 502 39.0
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 1.8e-78 297.7 600 34.8
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 9.9e-77 292.0 493 38.5
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.2e-76 290.8 441 42.4
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 7.1e-75 285.8 349 46.1
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.4e-69 266.9 422 41.0
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 4.2e-67 260.0 412 39.8
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 1.2e-66 258.5 479 37.2
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 6.7e-65 252.7 207 60.4
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 6.2e-63 246.1 553 32.5
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 1.1e-59 235.3 361 42.9
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.3e-57 228.4 208 56.7
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 8.7e-57 225.7 190 56.3
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.1e-48 198.7 148 63.5
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.3e-48 196.8 148 63.5
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.1e-46 190.7 324 40.7
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 3.3e-40 170.6 119 71.4
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 4.3e-40 170.2 598 29.4
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.7e-39 168.3 140 60.0
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.2e-37 162.2 119 64.7
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 2.9e-36 157.5 225 44.4
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.2e-27 127.1 159 45.3
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 1.2e-26 125.6 606 25.6
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.8e-17 95.1 79 63.3
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 2.0e-16 91.7 200 32.0
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.6e-16 91.3 70 61.4
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.2e-11 73.9 51 64.7
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 9.4e-11 72.8 62 51.6
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.7e-07 62.0 62 54.8
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 5.4e-06 57.0 30 80.0


User provided reference genes

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