Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 0.0e+00 1312.0 660 100.0
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 0.0e+00 1277.7 684 95.2
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 5.3e-279 964.1 665 75.2
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 5.9e-278 960.7 666 74.6
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.2e-275 953.0 662 75.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.1e-275 952.2 666 73.9
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 3.7e-264 914.8 666 71.6
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 6.5e-253 877.5 597 76.4
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 3.9e-237 825.1 679 65.4
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.5e-236 823.2 661 65.8
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 1.0e-234 817.0 667 64.6
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 5.8e-233 811.2 668 65.4
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.2e-232 809.3 673 63.3
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.1e-231 807.0 677 64.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.1e-228 797.0 670 64.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 4.3e-228 795.0 674 62.8
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.2e-225 786.9 704 60.9
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 4.4e-225 785.0 672 61.8
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-223 779.6 667 62.7
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.3e-221 773.5 674 61.0
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 3.9e-221 771.9 663 61.8
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 8.6e-221 770.8 665 61.8
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.9e-220 769.6 666 64.3
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 4.3e-220 768.5 664 61.9
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.8e-218 763.1 674 61.3
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 3.1e-218 762.3 678 60.8
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.0e-218 761.9 670 61.3
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.5e-217 760.0 712 57.7
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 2.2e-216 756.1 695 58.6
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.2e-214 750.4 665 59.1
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.7e-214 749.2 686 58.0
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 3.5e-214 748.8 667 59.4
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-213 746.9 673 60.2
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.3e-213 746.9 666 58.9
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 5.1e-213 745.0 673 60.0
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 4.3e-212 741.9 668 58.8
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.6e-212 741.5 692 58.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.2e-211 738.0 722 56.2
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.5e-209 733.4 666 58.3
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.6e-209 732.6 681 58.9
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 3.4e-209 732.3 670 58.8
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.7e-208 729.9 664 56.8
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 9.3e-207 724.2 696 56.8
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.5e-204 716.8 689 57.9
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.5e-204 716.1 667 56.8
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 2.7e-198 696.0 834 50.4
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 7.9e-198 694.5 696 56.0
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.3e-197 693.0 673 57.1
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.9e-196 689.9 675 56.0
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 2.8e-195 686.0 676 56.4
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 4.8e-195 685.3 741 52.4
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.1e-194 684.1 652 56.6
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 9.0e-194 681.0 658 57.8
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.2e-193 680.6 658 57.6
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 7.6e-193 677.9 669 55.6
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.8e-192 675.6 679 55.5
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.5e-191 671.8 619 59.6
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.2e-190 670.6 677 56.6
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 2.7e-190 669.5 677 55.1
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 3.5e-190 669.1 658 56.8
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 3.5e-190 669.1 658 56.8
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 3.5e-190 669.1 658 56.8
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 4.6e-190 668.7 661 56.0
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.0e-189 667.5 627 58.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.5e-188 663.7 672 54.3
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 2.6e-185 652.9 667 53.8
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 4.5e-185 652.1 681 54.3
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.2e-182 644.0 681 54.5
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 2.3e-181 639.8 588 58.3
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.8e-178 630.2 609 57.5
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 9.3e-175 617.8 659 50.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.2e-171 606.7 665 50.8
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.0e-169 600.1 663 50.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.9e-169 598.6 575 57.0
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.6e-164 583.2 453 66.7
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 9.7e-164 581.3 657 51.6
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 5.9e-161 572.0 532 59.4
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.3e-160 570.9 666 48.8
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.7e-160 570.5 588 55.1
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 8.5e-160 568.2 656 49.1
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 4.2e-159 565.8 657 49.5
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 7.2e-159 565.1 654 51.4
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.1e-158 563.5 598 55.0
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.0e-156 557.0 661 50.4
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 3.5e-153 546.2 655 48.9
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.1e-151 541.2 659 47.6
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-150 537.7 654 47.4
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.5e-148 530.8 632 49.2
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.8e-146 523.9 495 57.0
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.9e-144 516.5 673 44.7
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 8.5e-144 515.0 498 54.4
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.6e-142 510.8 574 53.8
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.4e-138 497.7 525 53.3
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.2e-132 478.0 586 49.0
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.4e-122 443.7 642 44.9
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 3.2e-122 443.4 669 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 1.1e-117 428.3 669 40.1
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 6.8e-117 425.6 411 58.2
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.1e-114 418.3 669 38.6
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 7.3e-111 405.6 550 43.8
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.2e-108 398.3 671 37.7
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 4.9e-107 392.9 756 37.3
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.1e-97 360.9 452 47.1
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.9e-87 327.8 226 71.2
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 2.5e-87 327.4 510 41.6
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 8.1e-86 322.4 550 38.7
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.0e-84 317.8 222 73.4
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.3e-78 298.5 458 42.4
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.4e-77 294.3 908 28.9
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.9e-77 292.7 208 71.2
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.3e-75 288.5 285 55.4
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 9.7e-63 245.7 308 49.7
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.3e-59 235.3 171 68.4
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.7e-55 219.9 170 65.9
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 3.7e-54 217.2 164 68.3
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.2e-52 212.2 135 77.8
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-51 208.8 146 71.2
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 3.2e-50 204.1 166 64.5
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.5e-50 203.4 172 64.5
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.7e-49 200.3 144 71.5
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.7e-47 193.4 359 36.5
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.0e-45 186.4 174 54.0
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 2.0e-44 184.9 176 56.8
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 6.5e-43 179.9 193 52.3
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.2e-38 164.9 139 61.9
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 7.0e-37 159.8 664 27.4
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 7.7e-36 156.4 103 71.8
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 7.7e-36 156.4 143 55.2
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.5e-34 151.4 146 54.8
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.3e-32 144.8 150 54.0
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 4.0e-32 144.1 280 35.4
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.6e-31 141.4 163 49.1
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 9.7e-31 139.4 121 57.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 5.5e-26 123.6 108 54.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 4.4e-23 114.0 247 31.6
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 7.5e-23 113.2 273 34.8
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 9.8e-23 112.8 91 67.0
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.4e-21 109.0 144 44.4
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.7e-20 104.8 61 85.2
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 7.7e-20 103.2 195 34.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 5.5e-18 97.1 55 81.8
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 2.8e-17 94.7 53 81.1
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 8.0e-17 93.2 55 74.5
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 3.0e-16 91.3 163 36.8
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 7.0e-13 80.1 64 57.8
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 8.0e-09 66.6 93 38.7
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-08 65.9 114 35.1
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.9e-06 58.2 64 43.8


User provided reference genes

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