Gene: AT5G39770

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39770
  • Transcript Identifier AT5G39770.1
  • Gene Type Coding gene
  • Location Chr5 : 15919241-15927549 : negative

Gene Family Information

  • ID HOM05D004944
  • #Genes/#Species 150/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39770.1
  • uniprot F4KFU8

Descriptions

  • Description Restriction endonuclease, type II-like superfamily protein
  • Computational description Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, endonuclease activity, nucleic acid binding, nuclease activity; INVOLVED IN: DNA repair, DNA metabolic process; CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT4G30870.1); Has 484 Blast hits to 435 proteins in 184 species: Archae - 0; Bacteria - 8; Metazoa - 125; Fungi - 136; Plants - 59; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006302
IEA
GOA Databasedouble-strand break repair
GO:0006302
IEA
InterProdouble-strand break repair
GO:0000737
IEA
Gene OntologyDNA catabolic process, endonucleolytic
GO:0000737
IEA
InterProDNA catabolic process, endonucleolytic
GO:0031573
IBA
Gene Ontologymitotic intra-S DNA damage checkpoint signaling1
GO:0000712
IBA
Gene Ontologyresolution of meiotic recombination intermediates1
GO:0000727
IBA
Gene Ontologydouble-strand break repair via break-induced replication1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0008821
IEA
Gene Ontologycrossover junction endodeoxyribonuclease activity
GO:0008821
IEA
InterProcrossover junction endodeoxyribonuclease activity
GO:0048257
IBA
Gene Ontology3'-flap endonuclease activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0048476
IBA
Gene OntologyHolliday junction resolvase complex1
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042530 EME1/EME2, C-terminal domain
IPR033309 Crossover junction endonuclease Mus81
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR011335 Restriction endonuclease type II-like
IPR006166 ERCC4 domain
Mapman id Description
13.3.5.5.2.1.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component MUS81