Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.7e-66 255.8 121 100.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.8e-63 245.7 121 95.9
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.5e-51 204.5 119 81.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 5.0e-50 201.1 121 81.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.6e-48 196.1 118 80.5
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.1e-48 195.7 119 78.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 4.8e-45 184.5 119 75.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.0e-43 179.1 113 77.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 5.0e-42 174.5 121 71.9
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 4.7e-40 167.9 119 65.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.3e-39 165.6 114 71.1
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 6.8e-39 164.1 120 65.0
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.2e-38 163.3 119 64.7
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 4.4e-38 161.4 118 65.3
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 9.8e-38 160.2 119 62.2
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 6.3e-37 157.5 120 63.3
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 6.3e-37 157.5 119 61.3
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 8.3e-37 157.1 119 60.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 7.0e-36 154.1 119 62.2
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.2e-35 153.3 118 58.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.7e-35 152.1 119 61.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 4.5e-35 151.4 119 61.3
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.2e-32 143.3 119 58.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.8e-31 139.4 116 59.5
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.8e-31 139.4 116 59.5
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.3e-31 139.0 116 59.5
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 3.0e-31 138.7 123 56.1
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.2e-30 136.7 117 55.6
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.2e-30 136.7 122 52.5
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.6e-30 135.6 117 54.7
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 2.6e-30 135.6 122 52.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.6e-30 135.6 120 52.5
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 7.5e-30 134.0 120 55.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 7.5e-30 134.0 120 55.8
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 9.8e-30 133.7 121 56.2
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 9.8e-30 133.7 120 55.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 9.8e-30 133.7 120 55.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 9.8e-30 133.7 120 55.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 9.8e-30 133.7 120 55.8
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 9.8e-30 133.7 122 54.9
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 9.8e-30 133.7 127 52.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 55.8
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 55.0
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 55.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 55.0
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 55.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.7e-29 132.9 122 55.7
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.2e-29 132.5 122 55.7
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 2.9e-29 132.1 120 54.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.9e-29 132.1 120 55.0
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.7e-29 131.7 120 55.0
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.9e-29 131.3 120 54.2
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.9e-29 131.3 124 54.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.9e-29 131.3 120 55.0
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 55.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.4e-28 129.8 121 52.9
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 54.2
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 2.4e-28 129.0 126 50.8
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 2.4e-28 129.0 126 50.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 4.1e-28 128.3 115 55.7
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 4.1e-28 128.3 120 52.5
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 4.1e-28 128.3 122 52.5
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 7.0e-28 127.5 126 50.0
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.0e-27 125.9 122 53.3
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.0e-27 125.9 122 53.3
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.7e-27 125.6 122 51.6
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.7e-27 125.6 122 51.6
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 3.5e-27 125.2 124 49.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 52.5
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.9e-27 124.4 123 52.0
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 5.9e-27 124.4 126 50.0
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 5.9e-27 124.4 122 52.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 5.9e-27 124.4 122 50.0
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.8e-27 124.0 124 52.4
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 2.3e-26 122.5 126 47.6
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 5.0e-26 121.3 126 49.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 6.6e-26 120.9 122 54.1
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.1e-25 120.2 123 50.4
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.5e-25 119.8 120 49.2
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 2.5e-25 119.0 119 49.6
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 2.5e-25 119.0 114 53.5
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 4.3e-25 118.2 114 54.4
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 9.5e-25 117.1 124 48.4
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.6e-24 116.3 127 47.2
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 2.1e-24 115.9 122 47.5
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.8e-24 115.5 124 46.0
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.6e-24 115.2 114 49.1
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 8.0e-24 114.0 114 47.4
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.4e-23 113.2 122 47.5
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.4e-23 113.2 122 47.5
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.4e-23 113.2 122 47.5
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 2.3e-23 112.5 126 46.8
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.3e-23 112.5 126 46.0
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 7.5e-22 107.5 110 50.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 7.5e-22 107.5 124 46.0
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.2e-21 105.9 122 45.1
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.7e-21 105.1 114 43.9
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 4.9e-21 104.8 118 46.6
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 4.1e-20 101.7 98 48.0
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 5.4e-20 101.3 127 42.5
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 9.2e-20 100.5 132 40.2
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.0e-19 99.4 69 69.6
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.0e-19 99.4 96 47.9
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.7e-19 99.0 98 54.1
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 7.8e-19 97.4 77 58.4
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 2.3e-18 95.9 65 72.3
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.5e-17 93.2 69 66.7
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.5e-17 92.4 65 70.8
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 5.6e-17 91.3 56 76.8
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 7.3e-17 90.9 58 74.1
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.2e-16 90.1 69 59.4
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.7e-16 88.2 74 56.8
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.2e-16 87.8 74 51.4
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.3e-15 85.9 133 39.1
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 3.1e-15 85.5 89 46.1
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 5.2e-15 84.7 55 69.1
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.3e-13 80.1 65 58.5
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.7e-13 79.7 164 30.5
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 8.3e-13 77.4 109 38.5
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.4e-12 76.6 67 56.7
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.9e-12 76.3 124 30.6
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 4.1e-12 75.1 56 58.9
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.1e-11 72.8 93 38.7
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.7e-11 72.4 85 47.1
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 3.5e-11 72.0 62 56.5
arahy.Tifrunner.gnm1.ann1.46RTPJ Arachis hypogaea HOM05D005168 ORTHO05D006358 7.8e-11 70.9 42 78.6
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.3e-10 70.1 57 52.6
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.9e-10 68.6 75 46.7
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 3.3e-09 65.5 90 36.7
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 7.3e-09 64.3 112 33.9
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.2e-08 63.5 102 34.3
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.8e-08 62.4 48 62.5
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 3.6e-08 62.0 112 31.2
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 4.7e-08 61.6 113 31.0
Glyma.20G021400 Glycine max HOM05D001329 ORTHO05D006358 4.7e-08 61.6 43 67.4
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 8.1e-08 60.8 112 29.5
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 8.1e-08 60.8 102 36.3
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 8.1e-08 60.8 128 29.7
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.8e-07 59.7 110 31.8
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.8e-07 59.7 112 29.5
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.8e-07 59.7 112 31.2
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 2.3e-07 59.3 111 32.4
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 2.3e-07 59.3 47 48.9
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 3.1e-07 58.9 113 33.6
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 4.0e-07 58.5 100 33.0
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.0e-07 58.5 122 33.6
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.2e-07 58.2 115 33.0
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.2e-07 58.2 77 39.0
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 6.8e-07 57.8 41 61.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.8e-07 57.8 122 33.6
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 6.8e-07 57.8 114 33.3
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 6.8e-07 57.8 115 31.3
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 8.9e-07 57.4 52 50.0
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 8.9e-07 57.4 123 35.0
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 8.9e-07 57.4 122 33.6
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.9e-07 57.4 124 32.3
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.2e-06 57.0 122 33.6
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.2e-06 57.0 122 33.6
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 2.0e-06 56.2 122 35.2
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.0e-06 56.2 50 50.0
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 2.0e-06 56.2 110 30.9
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 2.6e-06 55.8 113 32.7
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.4e-06 55.5 111 32.4
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 3.4e-06 55.5 113 32.7
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 3.4e-06 55.5 113 30.1
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 3.4e-06 55.5 112 28.6
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.4e-06 55.1 124 32.3
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 5.8e-06 54.7 113 32.7
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 5.8e-06 54.7 113 32.7
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 7.6e-06 54.3 113 31.0
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 7.6e-06 54.3 114 29.8
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 7.6e-06 54.3 113 33.6
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 7.6e-06 54.3 114 31.6
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 9.9e-06 53.9 117 29.1
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 9.9e-06 53.9 113 31.9


User provided reference genes

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