Gene: AT3G25940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G25940
  • Transcript Identifier AT3G25940.1
  • Gene Type Coding gene
  • Location Chr3 : 9495104-9495942 : positive

Gene Family Information

  • ID HOM05D005168
  • #Genes/#Species 146/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G25940.1
  • uniprot Q9LU97

Descriptions

  • Description TFIIB zinc-binding protein
  • Computational description TFIIB zinc-binding protein; FUNCTIONS IN: transcription regulator activity, DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20065.1); Has 975 Blast hits to 975 proteins in 277 species: Archae - 178; Bacteria - 0; Metazoa - 339; Fungi - 204; Plants - 110; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006379
IEA
Gene OntologymRNA cleavage
GO:0006379
IEA
InterPromRNA cleavage
GO:0006363
IBA
Gene Ontologytermination of RNA polymerase I transcription1
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IBA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005736
IBA
Gene OntologyRNA polymerase I complex1
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001222 Zinc finger, TFIIS-type
IPR012164 DNA-directed RNA polymerase subunit/transcription factor S
IPR034004 Pol I subunit A12, C-terminal zinc ribbon
Mapman id Description
35.1 not assigned.annotated