Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.G8BNVQ Arachis hypogaea HOM05D003522 ORTHO05D003993 1.5e-26 122.1 62 100.0
arahy.Tifrunner.gnm1.ann1.Z89DQ4 Arachis hypogaea HOM05D003522 ORTHO05D003993 5.4e-16 87.0 52 88.5
ClCG09G010690 Citrullus lanatus HOM05D003522 ORTHO05D003993 5.4e-16 87.0 52 88.5
MELO3C013179.2 Cucumis melo HOM05D003522 ORTHO05D003993 5.4e-16 87.0 52 88.5
Nitab4.5_0004612g0030 Nicotiana tabacum HOM05D003522 ORTHO05D003993 5.4e-16 87.0 52 88.5
Hund03511 Selenicereus undatus HOM05D003522 ORTHO05D003993 5.4e-16 87.0 52 88.5
AUR62003643 Chenopodium quinoa HOM05D003522 ORTHO05D003993 2.0e-15 85.1 52 86.5
AUR62017953 Chenopodium quinoa HOM05D003522 ORTHO05D003993 2.0e-15 85.1 52 86.5
ClCG06G013040 Citrullus lanatus HOM05D003522 ORTHO05D003993 2.0e-15 85.1 52 86.5
arahy.Tifrunner.gnm1.ann1.341EN6 Arachis hypogaea HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
arahy.Tifrunner.gnm1.ann1.QJ4IDW Arachis hypogaea HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
CSS0040441 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 6.0e-15 83.6 52 84.6
CANSAT11G1348 Cannabis sativa HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Cpa.g.sc126.37 Carica papaya HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Ca_06194_v3 Cicer arietinum L. HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
MELO3C017504.2 Cucumis melo HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
CsaV3_1G031190 Cucumis sativus L. HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Duzib150G0286 Durio zibethinus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Duzib168G1637 Durio zibethinus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Glyma.04G208600 Glycine max HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Glyma.06G157100 Glycine max HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Glyma.13G093400 Glycine max HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Gohir.A08G234900 Gossypium hirsutum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Gohir.D08G255300 Gossypium hirsutum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Gorai.004G272400 Gossypium raimondii HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Lj4g0002134 Lotus japonicus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Lj5g0004975 Lotus japonicus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Lalb_Chr07g0180191 Lupinus albus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Lalb_Chr12g0199151 Lupinus albus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Lalb_Chr13g0300421 Lupinus albus HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Medtr2g104440 Medicago truncatula HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Medtr5g072530 Medicago truncatula HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Nitab4.5_0000033g0430 Nicotiana tabacum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Nitab4.5_0000782g0190 Nicotiana tabacum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Peaxi162Scf00171g00327 Petunia axillaris HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Phvul.003G149400 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
QL02p096594 Quercus lobata HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Sed0017254 Sechium edule HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Sed0019676 Sechium edule HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Sc03g0004630 Simmondsia chinensis HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Solyc03g098470.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Sopen03g029210 Solanum pennellii HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
PGSC0003DMG400010156 Solanum tuberosum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
PGSC0003DMG400025548 Solanum tuberosum HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Thecc.06G016400 Theobroma cacao HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Thecc.09G164300 Theobroma cacao HOM05D003522 ORTHO05D003993 6.0e-15 83.6 61 75.4
Hund19625 Selenicereus undatus HOM05D003522 ORTHO05D003993 7.8e-15 83.2 50 88.0
Actinidia21860 Actinidia chinensis HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
MSTRG.26107 Avicennia marina HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
CiPaw.07G188400 Carya illinoinensis HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
CiPaw.08G038400 Carya illinoinensis HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
Phvul.009G153200 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
QL08p040368 Quercus lobata HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
GSVIVG01008301001 Vitis vinifera HOM05D003522 ORTHO05D003993 1.3e-14 82.4 61 73.8
CSS0040204 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
CAN.G929.30 Capsicum annuum HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
Cc04_g00460 Coffea canephora HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
Eucgr.L02749 Eucalyptus grandis HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
Hma1.2p1_1104F.1_g257440 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
Sabra06G0133600 Salix brachista HOM05D003522 ORTHO05D003993 1.7e-14 82.0 61 73.8
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 1.7e-14 82.0 61 73.8
MSTRG.19883 Avicennia marina HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
Ciclev10010045m.g Citrus clementina HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
Glyma.17G067100 Glycine max HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
Oeu004017.1 Olea europaea HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
Os02g0126700 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 72.1
Psat6g015920 Pisum sativum HOM05D003522 ORTHO05D003993 2.3e-14 81.6 60 75.0
TWI60G1574 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
TWI63G0474 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
unitig_92.g28119 Utricularia gibba HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 73.8
Zm00001eb338420 Zea mays HOM05D003522 ORTHO05D003993 2.3e-14 81.6 61 72.1
Atru.chr12.835 Acer truncatum HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 72.1
Manes.05G188200 Manihot esculenta HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
Manes.06G037450 Manihot esculenta HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
Nitab4.5_0001678g0020 Nicotiana tabacum HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
Peaxi162Scf00643g00641 Petunia axillaris HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 73.8
HPP92_018528 Vanilla planifolia HOM05D003522 ORTHO05D003993 3.0e-14 81.3 61 72.1
CsaV3_7G021700 Cucumis sativus L. HOM05D003522 ORTHO05D003993 3.9e-14 80.9 41 95.1
Migut.J01787 Erythranthe guttata HOM05D003522 ORTHO05D003993 3.9e-14 80.9 61 72.1
Eucgr.J03147 Eucalyptus grandis HOM05D003522 ORTHO05D003993 3.9e-14 80.9 41 95.1
Psat6g014800 Pisum sativum HOM05D003522 ORTHO05D003993 3.9e-14 80.9 41 95.1
PGR044G2568 Punica granatum HOM05D003522 ORTHO05D003993 3.9e-14 80.9 41 95.1
TWI15G0209 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 3.9e-14 80.9 61 72.1
TAR636G2407 Trochodendron aralioides HOM05D003522 ORTHO05D003993 3.9e-14 80.9 41 95.1
CDE01G0803 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
CDE12G0561 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
FvH4_7g02280 Fragaria vesca HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
FAN01G2196 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
FAN06G0337 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
FAN10G2139 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
FAN17G0034 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
FAN22G0545 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
Nitab4.5_0005074g0050 Nicotiana tabacum HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
PSO170G2534 Papaver somniferum HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 70.5
PSO782G3457 Papaver somniferum HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 70.5
RcHm_v2.0_Chr1g0319581 Rosa chinensis HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
RcHm_v2.0_Chr4g0403921 Rosa chinensis HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
THA.LOC104803931 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
unitig_37.g12145 Utricularia gibba HOM05D003522 ORTHO05D003993 5.0e-14 80.5 61 72.1
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 6.6e-14 80.1 61 72.1
CSS0025026 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 6.6e-14 80.1 61 72.1
Dinv37803 Davidia involucrata HOM05D003522 ORTHO05D003993 6.6e-14 80.1 61 72.1
Prupe.1G094500 Prunus persica HOM05D003522 ORTHO05D003993 6.6e-14 80.1 61 72.1
Prupe.4G278600 Prunus persica HOM05D003522 ORTHO05D003993 6.6e-14 80.1 61 72.1
SHI02961 Sapria himalayana HOM05D003522 ORTHO05D003993 6.6e-14 80.1 44 88.6
EL10Ac6g15226 Beta vulgaris HOM05D003522 ORTHO05D003993 8.6e-14 79.7 59 74.6
DCAR_014711 Daucus carota HOM05D003522 ORTHO05D003993 8.6e-14 79.7 43 90.7
Hma1.2p1_1261F.1_g271100 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 8.6e-14 79.7 61 72.1
Nn2g14329 Nelumbo nucifera HOM05D003522 ORTHO05D003993 8.6e-14 79.7 41 92.7
THA.LOC104803508 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 8.6e-14 79.7 61 72.1
TPR.G34745 Trifolium pratense HOM05D003522 ORTHO05D003993 8.6e-14 79.7 39 97.4
vmacro18702 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 8.6e-14 79.7 40 95.0
TAR383G1055 Trochodendron aralioides HOM05D003522 ORTHO05D003993 1.1e-13 79.3 41 92.7
Lsat_1_v5_gn_1_39580 Lactuca sativa HOM05D003522 ORTHO05D003993 1.5e-13 79.0 50 82.0
MBI14_g26429_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 1.5e-13 79.0 41 90.2
MBI16_g00671_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 1.5e-13 79.0 41 90.2
Zm00001eb120030 Zea mays HOM05D003522 ORTHO05D003993 1.5e-13 79.0 41 90.2
ATR0763G200 Amborella trichopoda HOM05D003522 ORTHO05D003993 1.9e-13 78.6 41 90.2
AL3G53200 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
AT2G18740 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
AT4G30330 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BcaB03g16666 Brassica carinata HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BcaB08g34822 Brassica carinata HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BcaC06g36458 Brassica carinata HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
A06p33110 Brassica napus HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
C03p59350 Brassica napus HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BolC3t18199H Brassica oleracea HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BolC7t40790H Brassica oleracea HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BraA06t26241Z Brassica rapa HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 2.5e-13 78.2 61 70.5
Carub.0003s3301 Capsella rubella HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
Carub.0007s1027 Capsella rubella HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
Thhalv10022941m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
Thhalv10026682m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
MD13G1262900 Malus domestica HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
Sp3g32240 Schrenkiella parvula HOM05D003522 ORTHO05D003993 2.5e-13 78.2 61 70.5
Rhsim12G0214100 Rhododendron simsii HOM05D003522 ORTHO05D003993 3.3e-13 77.8 38 97.4
Sp7g28200 Schrenkiella parvula HOM05D003522 ORTHO05D003993 3.3e-13 77.8 61 68.9
TAR626G0766 Trochodendron aralioides HOM05D003522 ORTHO05D003993 3.3e-13 77.8 41 90.2
Dinv42765 Davidia involucrata HOM05D003522 ORTHO05D003993 4.3e-13 77.4 60 70.0
ECA234G0975 Erigeron canadensis HOM05D003522 ORTHO05D003993 4.3e-13 77.4 41 90.2
HanXRQChr10g0311551 Helianthus annuus HOM05D003522 ORTHO05D003993 4.3e-13 77.4 41 90.2
Lsat_1_v5_gn_5_137520 Lactuca sativa HOM05D003522 ORTHO05D003993 4.3e-13 77.4 41 90.2
Mapoly0127s0039 Marchantia polymorpha HOM05D003522 ORTHO05D003993 4.3e-13 77.4 61 67.2
Os08g0151400 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 4.3e-13 77.4 37 97.3
PSO063G7604 Papaver somniferum HOM05D003522 ORTHO05D003993 4.3e-13 77.4 41 90.2
Aa31LG8G15860 Aethionema arabicum HOM05D003522 ORTHO05D003993 5.6e-13 77.0 61 68.9
CARHR109330 Cardamine hirsuta HOM05D003522 ORTHO05D003993 5.6e-13 77.0 61 68.9
Dinv43338 Davidia involucrata HOM05D003522 ORTHO05D003993 5.6e-13 77.0 59 71.2
PSO782G1667 Papaver somniferum HOM05D003522 ORTHO05D003993 5.6e-13 77.0 41 90.2
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 5.6e-13 77.0 45 84.4
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 9.5e-13 76.3 61 67.2
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 9.5e-13 76.3 42 83.3
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 9.5e-13 76.3 42 83.3
Pp3c14_15210 Physcomitrium patens HOM05D003522 ORTHO05D003993 9.5e-13 76.3 41 87.8
Pp3c2_10270 Physcomitrium patens HOM05D003522 ORTHO05D003993 9.5e-13 76.3 41 87.8
Psat6g139240 Pisum sativum HOM05D003522 ORTHO05D003993 9.5e-13 76.3 38 94.7
Psat6g005000 Pisum sativum HOM05D003522 ORTHO05D003993 1.2e-12 75.9 41 90.2
Aa31LG2G20200 Aethionema arabicum HOM05D001097 ORTHO05D001009 1.6e-12 75.5 42 81.0
Pp3c17_6070 Physcomitrium patens HOM05D003522 ORTHO05D003993 4.7e-12 73.9 41 82.9
SMO347G0208 Selaginella moellendorffii HOM05D003522 ORTHO05D003993 8.1e-12 73.2 41 82.9
AUR62038785 Chenopodium quinoa HOM05D003522 ORTHO05D003993 4.0e-11 70.9 51 74.5
Prupe.1G136300 Prunus persica HOM05D003522 ORTHO05D003993 5.2e-11 70.5 46 73.9
Cre08.g385200 Chlamydomonas reinhardtii HOM05D003522 ORTHO05D003993 6.8e-11 70.1 41 75.6
MCO12G107 Micromonas commoda HOM05D003522 ORTHO05D003993 6.8e-11 70.1 41 80.5
ECA246G2650 Erigeron canadensis HOM05D002081 ORTHO05D002088 9.8e-10 66.2 42 73.8
vmacro08527 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 2.2e-09 65.1 36 80.6
PRCOL_00004725 Prasinoderma coloniale HOM05D003522 ORTHO05D003993 3.7e-09 64.3 41 70.7
Carub.0005s1251 Capsella rubella HOM05D003522 ORTHO05D003993 1.4e-08 62.4 45 66.7
FAN12G1866 Fragaria x ananassa HOM05D003522 ORTHO05D003993 7.8e-07 56.6 62 58.1
FvH4_4g08420 Fragaria vesca HOM05D003522 ORTHO05D003993 1.0e-06 56.2 28 92.9
BcaC04g22886 Brassica carinata HOM05D003522 ORTHO05D003993 5.1e-06 53.9 61 55.7


User provided reference genes

Program Settings