Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BZI3ML Arachis hypogaea HOM05D005380 ORTHO05D006601 1.2e-97 359.8 178 100.0
arahy.Tifrunner.gnm1.ann1.GT0B0E Arachis hypogaea HOM05D005380 ORTHO05D006601 9.9e-71 270.4 174 79.9
arahy.Tifrunner.gnm1.ann1.UEF6CF Arachis hypogaea HOM05D005380 ORTHO05D006601 2.2e-70 269.2 174 79.3
Lj3g0005152 Lotus japonicus HOM05D005380 ORTHO05D006601 2.7e-60 235.7 178 69.7
Ca_23214_v3 Cicer arietinum L. HOM05D005380 ORTHO05D006601 1.3e-59 233.4 182 70.3
Glyma.03G103900 Glycine max HOM05D005380 ORTHO05D006601 1.7e-59 233.0 178 71.3
TPR.G31565 Trifolium pratense HOM05D005380 ORTHO05D006601 1.7e-59 233.0 182 69.2
Lalb_Chr07g0194321 Lupinus albus HOM05D005380 ORTHO05D006601 2.3e-59 232.6 182 68.7
Psat4g204440 Pisum sativum HOM05D005380 ORTHO05D006601 6.6e-59 231.1 182 69.2
VMungo0331G1684 Vigna mungo HOM05D005380 ORTHO05D006601 6.6e-59 231.1 182 69.2
Medtr8g012560 Medicago truncatula HOM05D005380 ORTHO05D006601 2.5e-58 229.2 182 69.8
GSVIVG01013627001 Vitis vinifera HOM05D005380 ORTHO05D006601 2.5e-58 229.2 183 67.2
TWI09G1549 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 8.1e-57 224.2 174 66.1
QL11p017903 Quercus lobata HOM05D005380 ORTHO05D006601 1.4e-56 223.4 183 65.0
Cfa000719 Carpinus fangiana HOM05D005380 ORTHO05D006601 2.4e-56 222.6 183 63.4
Glyma.07G119900 Glycine max HOM05D005380 ORTHO05D006601 2.4e-56 222.6 182 67.0
Phvul.010G053600 Phaseolus vulgaris HOM05D005380 ORTHO05D006601 1.2e-55 220.3 182 66.5
Potri.003G148700 Populus trichocarpa HOM05D005380 ORTHO05D006601 1.5e-55 219.9 183 64.5
Atru.chr10.630_Atru.chr10.631 Acer truncatum HOM05D005380 ORTHO05D006601 3.4e-55 218.8 183 63.9
CiPaw.10G065000 Carya illinoinensis HOM05D005380 ORTHO05D006601 3.4e-55 218.8 183 63.9
CSS0002209 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 7.6e-55 217.6 175 65.1
CSS0007558 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 7.6e-55 217.6 175 65.1
Sabra03G0108200 Salix brachista HOM05D005380 ORTHO05D006601 1.3e-54 216.9 183 64.5
Atru.chr10.626 Acer truncatum HOM05D005380 ORTHO05D006601 1.7e-54 216.5 183 63.4
Duzib235G1486 Durio zibethinus HOM05D005380 ORTHO05D006601 2.9e-54 215.7 183 62.8
Ciclev10014143m.g Citrus clementina HOM05D005380 ORTHO05D006601 6.4e-54 214.5 182 63.7
Potri.001G081900 Populus trichocarpa HOM05D005380 ORTHO05D006601 6.4e-54 214.5 183 63.4
TAR365G0677 Trochodendron aralioides HOM05D005380 ORTHO05D006601 6.4e-54 214.5 183 64.5
COL.COLO4_30926 Corchorus olitorius HOM05D005380 ORTHO05D006601 8.4e-54 214.2 184 63.0
Manes.11G052180 Manihot esculenta HOM05D005380 ORTHO05D006601 8.4e-54 214.2 183 63.4
Nn1g01426 Nelumbo nucifera HOM05D005380 ORTHO05D006601 8.4e-54 214.2 183 64.5
Prupe.4G105500 Prunus persica HOM05D005380 ORTHO05D006601 8.4e-54 214.2 184 63.0
Hma1.2p1_1380F.1_g279310 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 1.1e-53 213.8 183 62.3
THA.LOC104810347 Tarenaya hassleriana HOM05D005380 ORTHO05D006601 2.4e-53 212.6 182 62.6
FvH4_3g11790 Fragaria vesca HOM05D005380 ORTHO05D006601 3.2e-53 212.2 183 62.8
RcHm_v2.0_Chr5g0019211 Rosa chinensis HOM05D005380 ORTHO05D006601 3.2e-53 212.2 183 62.3
Thecc.06G135400 Theobroma cacao HOM05D005380 ORTHO05D006601 3.2e-53 212.2 183 61.7
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 5.4e-53 211.5 182 63.2
Actinidia12893 Actinidia chinensis HOM05D005380 ORTHO05D006601 7.1e-53 211.1 181 63.0
MD10G1238900 Malus domestica HOM05D005380 ORTHO05D006601 7.1e-53 211.1 184 62.5
Sed0014613 Sechium edule HOM05D005380 ORTHO05D006601 9.3e-53 210.7 179 62.6
Gohir.D10G048301 Gossypium hirsutum HOM05D005380 ORTHO05D006601 2.1e-52 209.5 167 67.7
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 2.1e-52 209.5 167 67.7
Cc09_g06540 Coffea canephora HOM05D005380 ORTHO05D006601 2.7e-52 209.1 183 60.1
Cpa.g.sc21.90 Carica papaya HOM05D005380 ORTHO05D006601 3.5e-52 208.8 182 61.5
Sp1g20340 Schrenkiella parvula HOM05D005380 ORTHO05D006601 6.0e-52 208.0 182 61.0
Dinv01434 Davidia involucrata HOM05D005380 ORTHO05D006601 1.0e-51 207.2 183 61.7
MD05G1259300 Malus domestica HOM05D005380 ORTHO05D006601 1.3e-51 206.8 183 61.2
A09p41900 Brassica napus HOM05D005380 ORTHO05D006601 1.8e-51 206.5 182 60.4
BraA09t39678Z Brassica rapa HOM05D005380 ORTHO05D006601 1.8e-51 206.5 182 60.4
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 3.0e-51 205.7 183 60.1
vmacro04057 Vaccinium macrocarpon HOM05D005380 ORTHO05D006601 3.9e-51 205.3 185 60.0
BcaB07g32281 Brassica carinata HOM05D005380 ORTHO05D006601 5.1e-51 204.9 182 59.9
BcaC05g26192 Brassica carinata HOM05D005380 ORTHO05D006601 5.1e-51 204.9 182 59.3
C05p21950 Brassica napus HOM05D005380 ORTHO05D006601 5.1e-51 204.9 182 59.3
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 5.1e-51 204.9 183 60.7
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 6.7e-51 204.5 182 59.3
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 8.7e-51 204.1 187 59.4
PSO357G0674 Papaver somniferum HOM05D005380 ORTHO05D006601 1.5e-50 203.4 183 59.0
Duzib192G0856 Durio zibethinus HOM05D005380 ORTHO05D006601 1.9e-50 203.0 182 59.3
Lj1A1141T73 Lonicera japonica HOM05D005380 ORTHO05D006601 1.9e-50 203.0 201 56.2
Peaxi162Scf00128g01143 Petunia axillaris HOM05D005380 ORTHO05D006601 1.9e-50 203.0 183 60.1
PGR083G1975 Punica granatum HOM05D005380 ORTHO05D006601 3.3e-50 202.2 182 58.8
DCAR_003768 Daucus carota HOM05D005380 ORTHO05D006601 4.3e-50 201.8 183 58.5
PSO170G0871 Papaver somniferum HOM05D005380 ORTHO05D006601 4.3e-50 201.8 188 56.9
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 5.6e-50 201.4 183 56.8
MELO3C021785.2 Cucumis melo HOM05D005380 ORTHO05D006601 7.4e-50 201.1 177 59.9
CsaV3_1G046710 Cucumis sativus L. HOM05D005380 ORTHO05D006601 9.6e-50 200.7 177 59.9
AL1G36400 Arabidopsis lyrata HOM05D005380 ORTHO05D006601 1.3e-49 200.3 182 58.8
Lsat_1_v5_gn_4_38401 Lactuca sativa HOM05D005380 ORTHO05D006601 1.3e-49 200.3 180 58.9
Ah.14g085840 Amaranthus hybridus HOM05D005380 ORTHO05D006601 2.1e-49 199.5 182 58.2
AT1G22860 Arabidopsis thaliana HOM05D005380 ORTHO05D006601 2.8e-49 199.1 183 56.8
Carub.0001s2236 Capsella rubella HOM05D005380 ORTHO05D006601 2.8e-49 199.1 182 58.8
CARHR023210 Cardamine hirsuta HOM05D005380 ORTHO05D006601 2.8e-49 199.1 182 58.8
Sc10g0009350 Simmondsia chinensis HOM05D005380 ORTHO05D006601 1.1e-48 197.2 183 60.1
AUR62043348 Chenopodium quinoa HOM05D005380 ORTHO05D006601 4.0e-48 195.3 187 56.1
MBI10_g16336_MAGBIO Magnolia biondii HOM05D005380 ORTHO05D006601 4.0e-48 195.3 167 62.3
Hund06739 Selenicereus undatus HOM05D005380 ORTHO05D006601 4.0e-48 195.3 183 59.6
ECA247G3537 Erigeron canadensis HOM05D005380 ORTHO05D006601 9.0e-48 194.1 175 59.4
SGA_v2.0_scaffold223G42899 Striga asiatica HOM05D005380 ORTHO05D006601 9.0e-48 194.1 183 59.0
Aqoxy5G03588 Aquilegia oxysepala HOM05D005380 ORTHO05D006601 1.2e-47 193.7 180 56.7
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 1.5e-47 193.4 183 57.4
Haze_06032 Corylus avellana HOM05D005380 ORTHO05D006601 1.5e-47 193.4 243 45.7
ECA234G0325 Erigeron canadensis HOM05D005380 ORTHO05D006601 1.3e-46 190.3 175 58.3
HanXRQChr14g0457361 Helianthus annuus HOM05D005380 ORTHO05D006601 2.9e-46 189.1 175 58.3
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 8.4e-46 187.6 168 59.5
HPP92_023728 Vanilla planifolia HOM05D005380 ORTHO05D006601 1.9e-45 186.4 183 54.1
MSTRG.12176 Avicennia marina HOM05D005380 ORTHO05D006601 1.6e-44 183.3 184 54.9
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 1.6e-44 183.3 159 60.4
EL10Ac8g19470 Beta vulgaris HOM05D005380 ORTHO05D006601 2.7e-44 182.6 187 53.5
ClCG01G008980 Citrullus lanatus HOM05D005380 ORTHO05D006601 2.7e-44 182.6 196 53.1
Migut.M01950 Erythranthe guttata HOM05D005380 ORTHO05D006601 4.6e-44 181.8 184 51.6
AUR62042012 Chenopodium quinoa HOM05D005380 ORTHO05D006601 6.7e-43 177.9 204 51.0
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 6.7e-43 177.9 160 59.4
BcaNung06594 Brassica carinata HOM05D005380 ORTHO05D006601 8.2e-41 171.0 184 52.2
FAN25G3771 Fragaria x ananassa HOM05D005380 ORTHO05D006601 2.4e-40 169.5 172 55.2
CDE02G1822 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 5.3e-40 168.3 183 50.8
FAN21G3255 Fragaria x ananassa HOM05D005380 ORTHO05D006601 5.3e-40 168.3 173 57.8
FAN16G1170 Fragaria x ananassa HOM05D005380 ORTHO05D006601 1.5e-39 166.8 172 56.4
Aa31LG7G6850 Aethionema arabicum HOM05D005380 ORTHO05D006601 7.6e-39 164.5 155 60.0
unitig_747.g21990 Utricularia gibba HOM05D005380 ORTHO05D006601 8.4e-38 161.0 176 50.0
Oeu000486.1 Olea europaea HOM05D005380 ORTHO05D006601 1.2e-36 157.1 174 50.6
Manes.16G057200 Manihot esculenta HOM05D005380 ORTHO05D006601 7.9e-36 154.5 151 58.3
Thhalv10006692m.g Eutrema salsugineum HOM05D005380 ORTHO05D006601 1.3e-35 153.7 150 57.3
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 5.7e-34 148.3 191 47.6
Pp3c6_25240 Physcomitrium patens HOM05D005380 ORTHO05D006601 1.7e-30 136.7 176 41.5
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 2.8e-25 119.4 184 41.8
AagrBONN_evm.TU.Sc2ySwM_362.853 Anthoceros agrestis HOM05D005380 ORTHO05D006601 1.9e-21 106.7 132 45.5
Rhsim13G0198600 Rhododendron simsii HOM05D005380 ORTHO05D006601 2.1e-20 103.2 131 48.1
SMO146G0159 Selaginella moellendorffii HOM05D005380 ORTHO05D006601 3.0e-19 99.4 177 39.5
SHI20665 Sapria himalayana HOM05D005380 ORTHO05D006601 2.2e-17 93.2 54 77.8
CBR_g10913 Chara braunii HOM05D005380 ORTHO05D006601 3.4e-15 85.9 105 42.9
QL09p040321 Quercus lobata HOM05D005380 ORTHO05D006601 2.7e-12 76.3 48 75.0
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.7e-12 76.3 48 75.0
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 4.4e-10 68.9 45 68.9
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.7e-09 67.0 31 93.5
TWI53G1262 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 2.8e-09 66.2 33 87.9
PRCOL_00002861 Prasinoderma coloniale HOM05D005380 ORTHO05D006601 1.0e-06 57.8 130 30.8
Solyc05g015210.4 Solanum lycopersicum HOM05D005380 ORTHO05D006601 1.0e-06 57.8 89 41.6


User provided reference genes

Program Settings