Gene: Sopen05g010460

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g010460
  • Transcript Identifier Sopen05g010460.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 10868819-10902701 : positive

Gene Family Information

  • ID HOM05D005380
  • #Genes/#Species 141/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g010460.1

Descriptions

  • Description Vacuolar sorting protein 39 | FUNCTIONS IN: small GTPase regulator activity | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Citron-like , Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 , Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006886
IEA
InterProintracellular protein transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0010015
ISO
PLAZA Integrative Orthologyroot morphogenesis AT1G22860

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G22860
GO:0033263
ISO
PLAZA Integrative OrthologyCORVET complex AT1G22860
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G22860

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
IPR032914 Vam6/VPS39/TRAP1 family
IPR019452 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
IPR001180 Citron homology (CNH) domain
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
22.3.4.9.7 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.CORVET-specific component VPS3