Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1624.0 797 100.0
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1608.6 811 97.8
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1406.0 805 84.6
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1398.6 803 84.2
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1395.6 807 83.4
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1390.9 802 83.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1380.5 809 82.3
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1379.4 812 82.6
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 807 82.2
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1368.6 809 82.3
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1368.2 808 81.9
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1362.1 809 81.0
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1359.4 807 81.5
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1339.7 809 80.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1339.3 803 81.1
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1338.9 807 80.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1338.2 813 80.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 806 80.3
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 810 80.2
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1333.9 808 80.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 810 79.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 808 80.1
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1328.9 817 79.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1326.2 814 80.3
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1325.8 811 79.8
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1325.5 814 80.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1325.1 809 79.9
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1325.1 813 79.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1324.3 807 79.3
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1323.1 814 80.2
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1322.8 810 79.5
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1321.6 807 79.3
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1321.6 807 79.2
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1320.4 809 79.7
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1320.4 814 78.6
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1319.3 808 79.6
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1319.3 810 79.3
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1318.9 814 79.6
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1316.6 810 79.0
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1314.3 814 78.7
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1312.0 797 79.7
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1311.6 814 78.5
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1307.0 811 78.9
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1298.9 812 77.6
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 886 72.6
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 811 77.1
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1287.3 811 77.4
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1287.3 795 78.2
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 810 77.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1277.7 810 77.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 804 77.6
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 800 76.9
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 800 76.2
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 799 76.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 800 76.4
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 801 76.9
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 800 76.4
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 799 76.5
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 801 76.4
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 809 76.8
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 800 76.0
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 800 76.0
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 800 76.1
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 831 75.9
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 801 76.0
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1256.9 801 76.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 792 76.6
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 806 76.1
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 810 75.8
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1253.8 801 76.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1251.5 794 76.3
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 801 75.7
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 803 75.3
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 801 75.5
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 800 75.4
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 803 75.1
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1243.0 806 75.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1238.4 846 71.7
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1237.2 810 75.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 802 74.9
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1231.5 806 74.9
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1231.1 794 75.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1229.9 797 75.8
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1228.4 804 74.4
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1226.5 799 74.3
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1225.7 794 74.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1222.2 784 76.1
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1219.5 796 74.4
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 797 74.8
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 803 73.1
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1208.4 859 68.9
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1201.0 792 73.7
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1195.3 811 71.5
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1192.9 806 73.1
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1191.0 867 68.6
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1189.5 797 72.5
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1188.3 812 74.5
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 795 73.5
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 760 76.7
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 798 72.2
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1166.4 820 70.9
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1166.4 795 70.6
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 913 65.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 811 71.6
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1136.7 964 62.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1128.6 964 62.8
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1123.6 768 71.2
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1119.8 801 69.0
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1080.9 810 65.7
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.6e-309 1065.8 815 64.3
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.8e-306 1055.0 804 66.4
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 5.8e-304 1047.3 810 67.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 3.2e-294 1015.0 785 63.8
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 7.8e-293 1010.4 606 80.5
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.8e-274 948.7 805 60.4
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 6.3e-242 841.3 781 58.3
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 9.5e-190 667.9 381 84.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 5.2e-188 662.1 853 44.0
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.6e-168 597.4 822 42.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.4e-155 553.1 792 42.6
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.8e-148 530.8 939 34.7
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 5.8e-147 525.8 841 39.0
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 9.4e-121 438.7 372 59.4
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 7.9e-120 435.6 342 68.1
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.0e-119 435.3 235 93.6
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.6e-115 421.4 322 63.7
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.0e-110 404.4 245 76.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.1e-71 274.2 195 69.2
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 3.4e-62 244.2 681 30.1
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 7.6e-62 243.0 172 72.1
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.1e-47 196.1 189 58.2
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.1e-44 183.3 143 70.6
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 2.1e-40 171.8 90 85.6
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.4e-39 169.1 255 42.4
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 7.9e-35 153.3 105 64.8
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.8e-34 152.1 97 72.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.8e-34 152.1 101 73.3
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.4e-31 142.5 170 50.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 6.9e-31 140.2 120 63.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 8.4e-29 133.3 107 67.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.2e-28 131.3 190 44.7
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 7.9e-27 126.7 113 53.1
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 4.3e-25 120.9 118 55.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.7e-25 119.8 82 76.8
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.7e-21 109.0 177 39.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.1e-20 106.3 258 29.5
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 3.2e-20 104.8 69 73.9
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.2e-20 104.8 109 53.2
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 3.9e-18 97.8 59 78.0
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 7.4e-17 93.6 68 67.6
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.4e-15 89.4 43 90.7
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 6.9e-15 87.0 50 78.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.0e-14 85.5 73 63.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.1e-12 79.7 137 48.2
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.9e-12 79.0 57 70.2
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 3.2e-12 78.2 136 37.5
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 3.6e-11 74.7 417 21.8
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.8e-10 72.4 60 53.3
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 1.3e-08 66.2 395 22.0
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.8e-08 65.1 57 61.4
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.8e-08 64.3 57 61.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.8e-08 64.3 57 61.4
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 1.1e-07 63.2 57 59.6
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.8e-07 62.4 54 63.0
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.8e-07 62.4 405 22.0
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 3.1e-07 61.6 334 21.9
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.1e-07 61.6 34 85.3
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.3e-07 60.8 54 61.1
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.3e-07 60.8 54 61.1
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.3e-07 60.8 54 61.1
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.3e-07 60.8 54 61.1


User provided reference genes

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