Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AFR4D1 Arachis hypogaea HOM05D001724 ORTHO05D007284 4.8e-233 810.8 421 100.0
arahy.Tifrunner.gnm1.ann1.HGG2PG Arachis hypogaea HOM05D001724 ORTHO05D007284 1.2e-202 709.9 433 86.8
Glyma.02G301000 Glycine max HOM05D001724 ORTHO05D007284 7.0e-176 620.9 403 80.1
LjContig00081g0019548 Lotus japonicus HOM05D001724 ORTHO05D007284 1.2e-167 593.6 400 77.5
Ca_06399_v3 Cicer arietinum L. HOM05D001724 ORTHO05D007284 1.0e-166 590.5 398 76.6
Phvul.008G279400 Phaseolus vulgaris HOM05D001724 ORTHO05D007284 3.0e-166 589.0 400 78.8
TPR.G8601 Trifolium pratense HOM05D001724 ORTHO05D007284 7.6e-162 574.3 398 75.1
VMungo0647G0703 Vigna mungo HOM05D001724 ORTHO05D007284 2.9e-161 572.4 401 76.1
Lalb_Chr10g0107431 Lupinus albus HOM05D001724 ORTHO05D007284 1.1e-160 570.5 369 79.9
Psat2g007080 Pisum sativum HOM05D001724 ORTHO05D007284 1.1e-160 570.5 398 75.9
Medtr5g096020 Medicago truncatula HOM05D001724 ORTHO05D007284 3.0e-158 562.4 399 72.9
CANSAT11G0717 Cannabis sativa HOM05D001724 ORTHO05D007284 6.0e-151 538.1 400 70.2
Thecc.07G012400 Theobroma cacao HOM05D001724 ORTHO05D007284 2.5e-149 532.7 367 74.9
Duzib268G0190 Durio zibethinus HOM05D001724 ORTHO05D007284 3.3e-149 532.3 401 69.8
Manes.15G059300 Manihot esculenta HOM05D001724 ORTHO05D007284 2.0e-146 523.1 399 69.9
Gohir.D01G062200 Gossypium hirsutum HOM05D001724 ORTHO05D007284 2.6e-146 522.7 401 70.1
Gorai.002G100800 Gossypium raimondii HOM05D001724 ORTHO05D007284 2.6e-146 522.7 401 70.1
Gohir.A01G092000 Gossypium hirsutum HOM05D001724 ORTHO05D007284 1.7e-145 520.0 401 69.6
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 2.2e-145 519.6 399 70.4
TAR629G2623 Trochodendron aralioides HOM05D001724 ORTHO05D007284 5.4e-144 515.0 399 67.9
Cpa.g.sc12.118 Carica papaya HOM05D001724 ORTHO05D007284 9.3e-144 514.2 401 68.3
CiPaw.12G138600 Carya illinoinensis HOM05D001724 ORTHO05D007284 2.7e-143 512.7 399 68.9
Dinv10341 Davidia involucrata HOM05D001724 ORTHO05D007284 3.5e-143 512.3 370 71.6
Ciclev10010260m.g Citrus clementina HOM05D001724 ORTHO05D007284 1.3e-142 510.4 359 72.7
PGR031G2084 Punica granatum HOM05D001724 ORTHO05D007284 5.1e-142 508.4 366 70.2
Lj8C179G13 Lonicera japonica HOM05D001724 ORTHO05D007284 8.7e-142 507.7 339 75.2
Potri.001G368500 Populus trichocarpa HOM05D001724 ORTHO05D007284 1.5e-141 506.9 399 68.2
GSVIVG01014695001 Vitis vinifera HOM05D001724 ORTHO05D007284 1.9e-141 506.5 355 73.0
Rhsim06G0230500 Rhododendron simsii HOM05D001724 ORTHO05D007284 3.3e-141 505.8 366 70.8
MD03G1027000 Malus domestica HOM05D001724 ORTHO05D007284 1.3e-140 503.8 399 69.2
QL08p003952 Quercus lobata HOM05D001724 ORTHO05D007284 1.3e-140 503.8 402 67.9
COL.COLO4_09842 Corchorus olitorius HOM05D001724 ORTHO05D007284 2.8e-140 502.7 401 66.6
Eucgr.F03687 Eucalyptus grandis HOM05D001724 ORTHO05D007284 4.8e-140 501.9 402 67.4
vmacro11596 Vaccinium macrocarpon HOM05D001724 ORTHO05D007284 1.1e-139 500.7 341 73.9
Prupe.6G024300 Prunus persica HOM05D001724 ORTHO05D007284 1.4e-139 500.4 399 67.9
Haze_09831 Corylus avellana HOM05D001724 ORTHO05D007284 9.0e-139 497.7 438 63.2
CSS0036592 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D007284 2.0e-138 496.5 362 70.2
Peaxi162Scf00006g00319 Petunia axillaris HOM05D001724 ORTHO05D007284 2.0e-138 496.5 359 71.0
Cc05_g15000 Coffea canephora HOM05D001724 ORTHO05D007284 5.8e-138 495.0 364 70.1
Lsat_1_v5_gn_7_114320 Lactuca sativa HOM05D001724 ORTHO05D007284 4.9e-137 491.9 362 69.3
Oeu049406.1 Olea europaea HOM05D001724 ORTHO05D007284 1.1e-136 490.7 370 67.6
Actinidia30393 Actinidia chinensis HOM05D001724 ORTHO05D007284 1.4e-136 490.3 384 66.7
TWI56G0926 Tripterygium wilfordii HOM05D001724 ORTHO05D007284 1.9e-136 490.0 365 70.4
Sabra16G0241600 Salix brachista HOM05D001724 ORTHO05D007284 5.5e-136 488.4 401 65.1
Solyc12g015710.2 Solanum lycopersicum HOM05D001724 ORTHO05D007284 7.1e-136 488.0 359 70.5
THA.LOC104815694 Tarenaya hassleriana HOM05D001724 ORTHO05D007284 7.1e-136 488.0 399 64.9
Aa31LG8G390 Aethionema arabicum HOM05D001724 ORTHO05D007284 1.6e-135 486.9 404 63.6
Sopen12g007630 Solanum pennellii HOM05D001724 ORTHO05D007284 1.6e-135 486.9 359 70.2
FvH4_3g42960 Fragaria vesca HOM05D001724 ORTHO05D007284 2.1e-135 486.5 420 65.2
Sc03g0011450 Simmondsia chinensis HOM05D001724 ORTHO05D007284 2.7e-135 486.1 339 71.7
A01p40360 Brassica napus HOM05D001724 ORTHO05D007284 6.0e-135 485.0 401 63.3
BraA01t04071Z Brassica rapa HOM05D001724 ORTHO05D007284 6.0e-135 485.0 401 63.3
Aqoxy4G02217 Aquilegia oxysepala HOM05D001724 ORTHO05D007284 1.0e-134 484.2 359 69.4
Hma1.2p1_2829F.1_g329190 Hydrangea macrophylla HOM05D001724 ORTHO05D007284 1.3e-134 483.8 399 65.9
AT3G13180 Arabidopsis thaliana HOM05D001724 ORTHO05D007284 1.8e-134 483.4 401 63.6
AL3G24930 Arabidopsis lyrata HOM05D001724 ORTHO05D007284 2.3e-134 483.0 401 63.3
BolC1t05137H Brassica oleracea HOM05D001724 ORTHO05D007284 2.3e-134 483.0 401 63.1
ECA236G1337 Erigeron canadensis HOM05D001724 ORTHO05D007284 2.3e-134 483.0 339 71.7
C01p51890 Brassica napus HOM05D001724 ORTHO05D007284 3.0e-134 482.6 401 63.1
Thhalv10020504m.g Eutrema salsugineum HOM05D001724 ORTHO05D007284 3.9e-134 482.3 401 64.1
PGSC0003DMG402029795 Solanum tuberosum HOM05D001724 ORTHO05D007284 1.1e-133 480.7 367 68.4
BcaB04g21001 Brassica carinata HOM05D001724 ORTHO05D007284 1.5e-133 480.3 401 62.8
PSO675G5997 Papaver somniferum HOM05D001724 ORTHO05D007284 1.5e-133 480.3 393 63.6
Sp3g11360 Schrenkiella parvula HOM05D001724 ORTHO05D007284 3.3e-133 479.2 399 63.2
Carub.0003s1253 Capsella rubella HOM05D001724 ORTHO05D007284 5.6e-133 478.4 401 64.1
FAN11G2991 Fragaria x ananassa HOM05D001724 ORTHO05D007284 5.6e-133 478.4 429 64.3
FAN25G0452 Fragaria x ananassa HOM05D001724 ORTHO05D007284 7.4e-133 478.0 420 64.5
PSO541G6316 Papaver somniferum HOM05D001724 ORTHO05D007284 7.4e-133 478.0 393 63.6
RcHm_v2.0_Chr5g0077011 Rosa chinensis HOM05D001724 ORTHO05D007284 1.3e-132 477.2 420 63.3
HanXRQChr15g0492631 Helianthus annuus HOM05D001724 ORTHO05D007284 2.8e-132 476.1 339 70.5
FAN21G0812 Fragaria x ananassa HOM05D001724 ORTHO05D007284 4.8e-132 475.3 429 63.6
Ah.04g166610 Amaranthus hybridus HOM05D001724 ORTHO05D007284 1.4e-131 473.8 360 68.1
MSTRG.15797 Avicennia marina HOM05D001724 ORTHO05D007284 7.6e-130 468.0 359 66.3
Hund01886 Selenicereus undatus HOM05D001724 ORTHO05D007284 7.6e-130 468.0 341 67.4
SalBow8G2422 Salvia bowleyana HOM05D001724 ORTHO05D007284 8.4e-129 464.5 349 66.8
SGA_v2.0_scaffold168G38565 Striga asiatica HOM05D001724 ORTHO05D007284 5.5e-128 461.8 363 66.1
Nitab4.5_0000163g0170 Nicotiana tabacum HOM05D001724 ORTHO05D007284 2.1e-127 459.9 327 72.2
unitig_746.g26709 Utricularia gibba HOM05D001724 ORTHO05D007284 1.6e-124 450.3 383 63.7
EL10Ac4g07557 Beta vulgaris HOM05D001724 ORTHO05D007284 1.7e-121 440.3 403 59.6
HPP92_018204 Vanilla planifolia HOM05D001724 ORTHO05D007284 3.2e-120 436.0 341 64.5
Atru.BG.138.p Acer truncatum HOM05D001724 ORTHO05D007284 9.3e-120 434.5 347 67.1
FAN16G2293 Fragaria x ananassa HOM05D001724 ORTHO05D007284 7.9e-119 431.4 444 57.0
Nitab4.5_0010137g0010 Nicotiana tabacum HOM05D001724 ORTHO05D007284 5.7e-117 425.2 341 65.7
Os09g0477900 Oryza sativa ssp. japonica HOM05D001724 ORTHO05D007284 1.7e-116 423.7 337 64.1
ATR0751G043 Amborella trichopoda HOM05D001724 ORTHO05D007284 4.1e-115 419.1 344 63.1
Zm00001eb101440 Zea mays HOM05D001724 ORTHO05D007284 1.2e-114 417.5 358 60.9
Migut.M01648 Erythranthe guttata HOM05D001724 ORTHO05D007284 2.6e-114 416.4 338 63.3
Atru.chr2.2823 Acer truncatum HOM05D001724 ORTHO05D007284 5.7e-101 372.1 287 69.3
AUR62017112 Chenopodium quinoa HOM05D001724 ORTHO05D007284 4.8e-100 369.0 400 52.5
CAN.G325.2 Capsicum annuum HOM05D001724 ORTHO05D007284 2.9e-97 359.8 294 65.0
Pp3c27_2290 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.5e-96 356.7 337 54.3
CDE02G1840 Ceratophyllum demersum HOM05D001724 ORTHO05D007284 4.2e-96 355.9 241 71.4
AUR62036465 Chenopodium quinoa HOM05D001724 ORTHO05D007284 4.7e-95 352.4 342 57.0
AagrBONN_evm.TU.Sc2ySwM_344.5083 Anthoceros agrestis HOM05D001724 ORTHO05D007284 2.3e-94 350.1 343 52.8
Mapoly0080s0050 Marchantia polymorpha HOM05D001724 ORTHO05D007284 2.4e-91 340.1 366 50.8
DCAR_022608 Daucus carota HOM05D001724 ORTHO05D007284 1.7e-89 334.0 388 51.3
SMO133G0033 Selaginella moellendorffii HOM05D001724 ORTHO05D007284 2.9e-89 333.2 331 52.0
SEGI_07558 Sequoiadendron giganteum HOM05D001724 ORTHO05D007284 3.8e-89 332.8 274 62.0
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 8.9e-78 295.0 369 45.0
Sc03g0011370 Simmondsia chinensis HOM05D001724 ORTHO05D007284 9.2e-67 258.5 355 43.9
FvH4_3g43140 Fragaria vesca HOM05D001724 ORTHO05D007284 1.1e-59 235.0 297 49.8
CARHR087770 Cardamine hirsuta HOM05D001724 ORTHO05D007284 1.1e-56 224.9 189 59.8
Cre50.g761447 Chlamydomonas reinhardtii HOM05D001724 ORTHO05D007284 8.4e-44 182.2 361 33.0
FvH4_3g43190 Fragaria vesca HOM05D001724 ORTHO05D007284 3.2e-43 180.3 155 61.9
FvH4_3g43160 Fragaria vesca HOM05D001724 ORTHO05D007284 8.1e-31 139.0 117 65.8
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 8.1e-23 112.5 306 31.0
Medtr5g095140 Medicago truncatula HOM05D001724 ORTHO05D007284 1.4e-22 111.7 100 60.0
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.1e-14 85.5 113 46.9
Oeu049377.1 Olea europaea HOM05D001724 ORTHO05D007284 1.5e-13 81.6 93 46.2
Rhsim03G0025600 Rhododendron simsii HOM05D001724 ORTHO05D021162 2.6e-13 80.9 102 48.0
SEGI_36284 Sequoiadendron giganteum HOM05D001724 ORTHO05D007284 2.6e-13 80.9 61 67.2
Rhsim03G0026500 Rhododendron simsii HOM05D001724 ORTHO05D007284 1.4e-11 75.1 74 56.8
SEGI_00859 Sequoiadendron giganteum HOM05D001724 ORTHO05D007284 3.2e-11 73.9 72 54.2
Actinidia30396 Actinidia chinensis HOM05D001724 ORTHO05D007284 1.6e-10 71.6 38 78.9
PRCOL_00005632 Prasinoderma coloniale HOM05D001724 ORTHO05D007284 1.1e-08 65.5 90 41.1
Oeu049381.1 Olea europaea HOM05D001724 ORTHO05D007284 3.7e-07 60.5 68 54.4
SEGI_06610 Sequoiadendron giganteum HOM05D001724 ORTHO05D007284 6.3e-07 59.7 62 51.6
C08p11210 Brassica napus HOM05D001724 ORTHO05D007284 9.0e-06 55.8 41 58.5
BolC6t37573H Brassica oleracea HOM05D001724 ORTHO05D007284 9.0e-06 55.8 41 58.5


User provided reference genes

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