Gene: AT3G13180

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G13180
  • Transcript Identifier AT3G13180.1
  • Gene Type Coding gene
  • Location Chr3 : 4236326-4239966 : negative

Gene Family Information

  • ID HOM05D001724
  • #Genes/#Species 375/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G13180.1
  • uniprot Q8VYC4

Descriptions

  • Description NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
  • Computational description NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), NusB/RsmB/TIM44 (InterPro:IPR006027); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 10280 Blast hits to 10234 proteins in 2431 species: Archae - 377; Bacteria - 6832; Metazoa - 588; Fungi - 364; Plants - 311; Viruses - 0; Other Eukaryotes - 1808 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0001510
IEA
GOA DatabaseRNA methylation
GO:0001510
IBA
Gene OntologyRNA methylation1
GO:0001510
IEA
InterProRNA methylation
GO:0032259
IEA
GOA Databasemethylation
GO:0000470
IBA
Gene Ontologymaturation of LSU-rRNA1
GO:0070475
IBA
Gene OntologyrRNA base methylation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D001724
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity
GO:0009383
IBA
Gene OntologyrRNA (cytosine-C5-)-methyltransferase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IBA
Gene Ontologynucleolus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023268 RNA (C5-cytosine) methyltransferase, putative Rsm-related, plant
IPR035926 NusB-like superfamily
IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type
IPR023267 RNA (C5-cytosine) methyltransferase
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR006027 NusB/RsmB/TIM44
Mapman id Description
35.1 not assigned.annotated