Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 4.3e-156 554.7 295 100.0
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 3.7e-139 498.4 336 84.8
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 5.7e-116 421.4 318 72.6
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 6.3e-115 417.9 313 70.3
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 5.4e-114 414.8 316 70.9
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 9.2e-114 414.1 314 70.1
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 1.2e-113 413.7 316 69.9
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 1.7e-112 409.8 314 70.4
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 2.5e-111 406.0 316 69.6
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 3.6e-110 402.1 310 72.3
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 5.2e-109 398.3 311 69.5
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 3.4e-108 395.6 235 83.0
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.4e-108 395.6 238 81.9
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 7.5e-108 394.4 236 80.1
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 1.3e-107 393.7 238 81.1
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 3.7e-107 392.1 310 68.4
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 4.9e-107 391.7 238 80.3
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 8.3e-107 391.0 237 81.0
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 1.1e-106 390.6 230 83.0
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 1.4e-106 390.2 238 79.8
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 3.2e-106 389.0 228 82.0
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 5.4e-106 388.3 230 80.0
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 1.2e-105 387.1 227 82.4
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 1.2e-105 387.1 290 70.0
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.0e-105 386.3 239 80.8
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 2.7e-105 386.0 227 82.8
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 3.5e-105 385.6 236 80.5
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 6.0e-105 384.8 235 79.6
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 7.8e-105 384.4 230 80.4
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 7.8e-105 384.4 227 81.1
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 7.8e-105 384.4 237 80.2
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 1.0e-104 384.0 236 80.1
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 1.3e-104 383.6 237 79.3
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 1.3e-104 383.6 235 78.7
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 1.7e-104 383.3 238 78.6
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 1.7e-104 383.3 229 80.8
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 1.7e-104 383.3 238 77.3
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 2.3e-104 382.9 297 68.0
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 3.9e-104 382.1 303 68.0
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 3.9e-104 382.1 227 81.1
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 5.0e-104 381.7 235 79.1
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 5.0e-104 381.7 227 81.1
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 6.6e-104 381.3 235 79.1
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 6.6e-104 381.3 229 79.5
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 1.1e-103 380.6 238 76.9
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 1.1e-103 380.6 229 79.9
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 1.1e-103 380.6 227 80.6
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 1.1e-103 380.6 227 80.6
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 1.1e-103 380.6 238 79.0
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 1.5e-103 380.2 235 78.7
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.5e-103 379.4 235 78.3
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 2.5e-103 379.4 302 66.6
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 3.3e-103 379.0 229 79.5
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 3.3e-103 379.0 229 79.5
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.3e-103 378.6 229 79.5
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 5.6e-103 378.3 235 78.3
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 5.6e-103 378.3 239 79.1
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 7.3e-103 377.9 239 78.7
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 7.3e-103 377.9 300 66.0
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 9.5e-103 377.5 238 77.3
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 9.5e-103 377.5 291 68.0
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 1.2e-102 377.1 237 77.6
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.6e-102 376.7 291 68.4
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 1.6e-102 376.7 232 78.4
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 1.6e-102 376.7 232 78.4
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.6e-102 376.7 230 79.1
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 1.6e-102 376.7 227 80.2
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 2.1e-102 376.3 235 78.3
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 2.1e-102 376.3 231 78.8
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 2.1e-102 376.3 247 74.5
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 2.8e-102 375.9 297 66.0
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 3.6e-102 375.6 236 78.0
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 3.6e-102 375.6 230 78.7
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 4.7e-102 375.2 238 77.7
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 4.7e-102 375.2 239 75.7
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 4.7e-102 375.2 237 77.6
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 6.2e-102 374.8 228 79.4
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 1.1e-101 374.0 224 80.4
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 1.4e-101 373.6 290 67.2
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 1.4e-101 373.6 229 77.7
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 1.4e-101 373.6 235 78.3
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.8e-101 373.2 227 78.0
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 2.3e-101 372.9 227 78.4
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 2.3e-101 372.9 238 76.1
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 2.3e-101 372.9 229 79.5
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 2.3e-101 372.9 313 62.6
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 3.1e-101 372.5 290 66.9
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 4.0e-101 372.1 291 68.4
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 4.0e-101 372.1 229 78.2
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 4.0e-101 372.1 237 75.5
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 5.2e-101 371.7 290 66.9
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 5.2e-101 371.7 227 78.4
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 5.2e-101 371.7 227 78.4
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 5.2e-101 371.7 234 76.5
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 6.8e-101 371.3 279 69.2
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 6.8e-101 371.3 229 78.2
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 6.8e-101 371.3 236 76.7
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 6.8e-101 371.3 224 79.5
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 8.9e-101 370.9 238 76.5
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 8.9e-101 370.9 227 78.0
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 8.9e-101 370.9 278 69.1
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 8.9e-101 370.9 229 77.7
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 8.9e-101 370.9 227 78.9
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 1.2e-100 370.5 298 66.1
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.5e-100 370.2 291 67.4
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 2.0e-100 369.8 229 76.4
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 2.6e-100 369.4 229 74.2
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 2.6e-100 369.4 229 77.7
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 3.4e-100 369.0 229 77.7
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 3.4e-100 369.0 238 75.6
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 4.4e-100 368.6 298 66.1
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 4.4e-100 368.6 298 66.1
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 4.4e-100 368.6 239 76.2
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 7.5e-100 367.9 305 64.6
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 7.5e-100 367.9 227 77.5
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 9.8e-100 367.5 282 67.4
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 1.3e-99 367.1 239 75.7
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 1.3e-99 367.1 227 78.0
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 1.7e-99 366.7 227 78.0
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 1.7e-99 366.7 278 68.3
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 2.2e-99 366.3 309 62.8
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 2.2e-99 366.3 309 62.8
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 3.7e-99 365.5 227 77.1
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 6.4e-99 364.8 238 73.9
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 8.3e-99 364.4 274 69.0
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 8.3e-99 364.4 236 73.7
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.9e-98 363.2 284 66.2
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 2.4e-98 362.8 231 75.8
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 3.2e-98 362.5 306 63.4
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 3.2e-98 362.5 229 76.9
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 3.2e-98 362.5 235 74.5
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 3.2e-98 362.5 305 63.0
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 5.4e-98 361.7 309 61.5
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 5.4e-98 361.7 235 74.0
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.2e-97 360.5 238 72.7
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.2e-97 360.5 235 74.5
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 2.1e-97 359.8 251 70.1
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 7.8e-97 357.8 238 72.7
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 7.8e-97 357.8 238 74.4
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 8.6e-96 354.4 230 73.5
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 2.5e-95 352.8 228 75.9
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 4.3e-95 352.1 255 71.4
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 1.2e-94 350.5 231 73.2
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 1.6e-94 350.1 223 74.0
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 2.1e-94 349.7 315 61.3
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 6.2e-94 348.2 229 72.5
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.1e-93 347.4 214 77.1
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 1.1e-93 347.4 291 62.9
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 1.8e-93 346.7 229 74.7
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 7.5e-92 341.3 211 76.3
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 9.9e-92 340.9 238 70.2
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 8.3e-91 337.8 224 73.7
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 1.6e-89 333.6 224 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 4.6e-89 332.0 224 72.8
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 2.3e-88 329.7 224 71.0
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 1.1e-85 320.9 220 69.1
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 3.1e-85 319.3 196 78.6
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 2.0e-84 316.6 237 68.8
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 2.9e-83 312.8 190 78.4
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 7.1e-82 308.1 196 76.5
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 3.9e-80 302.4 192 75.0
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 1.6e-78 297.0 230 66.5
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.1e-77 294.3 200 72.5
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 4.9e-75 285.4 190 74.7
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 6.6e-72 275.0 223 67.7
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 8.7e-72 274.6 148 87.2
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 4.6e-65 252.3 185 68.1
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 5.6e-55 218.8 236 50.0
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 3.7e-46 189.5 241 43.2
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 8.2e-46 188.3 128 71.1
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-43 179.5 220 44.5
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 2.9e-35 153.3 225 37.3
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 2.7e-33 146.7 248 37.5
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 1.1e-31 141.4 110 66.4
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 4.1e-29 132.9 160 53.8
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 5.9e-28 129.0 97 59.8
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 7.4e-23 112.1 69 75.4
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 5.3e-21 105.9 85 65.9
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 5.3e-21 105.9 85 65.9
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 2.2e-19 100.5 59 83.1
TPR.G14062 Trifolium pratense HOM05D001872 ORTHO05D001859 7.2e-18 95.5 117 51.3
PGSC0003DMG400012082 Solanum tuberosum HOM05D003800 ORTHO05D004549 2.7e-12 77.0 48 75.0
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 1.4e-08 64.7 32 81.2
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 4.0e-08 63.2 32 81.2
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 5.2e-08 62.8 32 78.1


User provided reference genes

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