Gene: AT5G16440

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G16440
  • Transcript Identifier AT5G16440.1
  • Gene Type Coding gene
  • Location Chr5 : 5371765-5373575 : positive

Gene Family Information

  • ID HOM05D003800
  • #Genes/#Species 182/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G16440.1
  • symbol IPP1
  • uniprot Q38929

Descriptions

  • Description isopentenyl diphosphate isomerase 1
  • Computational description isopentenyl diphosphate isomerase 1 (IPP1); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process; LOCATED IN: cytosol, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (TAIR:AT3G02780.1); Has 2226 Blast hits to 2225 proteins in 801 species: Archae - 35; Bacteria - 1199; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008299
IEA
GOA Databaseisoprenoid biosynthetic process
GO:0008299
TAS
Gene Ontologyisoprenoid biosynthetic process1
GO:0008299
IEA
InterProisoprenoid biosynthetic process
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0009240
IMP
IBA
Gene Ontologyisopentenyl diphosphate biosynthetic process2 3
GO:0015995
TAS, IEA
Gene Ontologychlorophyll biosynthetic process1
GO:0050992
IEA
Gene Ontologydimethylallyl diphosphate biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004452
IEA
GOA Databaseisopentenyl-diphosphate delta-isomerase activity
GO:0004452
IDA, IMP
IBA
Gene Ontologyisopentenyl-diphosphate delta-isomerase activity1 2 3
GO:0004452
IEA
InterProisopentenyl-diphosphate delta-isomerase activity
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA, HDA
Gene Ontologyplastid2 4
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast5
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm3
GO:0005829
IDA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1
IPR015797 NUDIX hydrolase-like domain superfamily
IPR000086 NUDIX hydrolase domain
Mapman id Description
9.1.1.7 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase