Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.1e-248 862.8 423 100.0
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 3.1e-248 861.3 423 99.8
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 2.7e-228 795.0 423 90.5
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 5.7e-226 787.3 423 89.6
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 5.9e-223 777.3 423 88.7
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 3.8e-222 774.6 423 89.1
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 4.2e-221 771.2 423 88.4
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 4.7e-220 767.7 421 88.6
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 2.3e-219 765.4 422 88.6
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 3.4e-218 761.5 427 86.9
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 3.1e-216 755.0 423 87.7
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 4.4e-202 708.0 417 79.6
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 3.7e-201 704.9 422 78.7
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 6.6e-198 694.1 429 76.7
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 1.2e-196 689.9 400 81.0
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.6e-196 689.5 415 79.3
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.1e-196 689.1 415 79.3
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 4.7e-196 688.0 423 77.5
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 1.4e-195 686.4 415 78.6
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 1.4e-195 686.4 419 78.5
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 3.1e-195 685.3 419 77.6
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 3.1e-195 685.3 415 78.3
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 1.3e-193 679.9 397 80.4
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 1.7e-193 679.5 394 80.2
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 2.2e-193 679.1 415 76.4
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 2.9e-193 678.7 421 76.7
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 6.4e-193 677.6 401 79.1
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 2.4e-192 675.6 425 75.1
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 3.2e-192 675.2 419 78.0
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 3.2e-192 675.2 408 77.9
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 5.4e-192 674.5 415 76.4
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 5.4e-192 674.5 415 76.4
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 9.2e-192 673.7 425 75.8
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 4.6e-191 671.4 428 75.2
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 7.8e-191 670.6 420 76.7
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 7.8e-191 670.6 415 77.1
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 5.0e-190 667.9 415 78.1
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 1.1e-189 666.8 399 79.4
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 1.5e-189 666.4 416 76.9
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 2.5e-189 665.6 400 78.2
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 2.5e-189 665.6 401 78.6
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 7.3e-189 664.1 431 73.8
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 9.5e-189 663.7 420 74.3
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 9.5e-189 663.7 404 76.2
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 1.2e-188 663.3 399 76.9
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 4.7e-188 661.4 423 74.2
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 6.2e-188 661.0 404 76.0
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 1.1e-187 660.2 416 76.7
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 1.8e-187 659.4 416 75.0
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 3.1e-187 658.7 419 75.9
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 5.2e-187 657.9 418 75.6
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 8.9e-187 657.1 422 74.2
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 1.5e-186 656.4 395 77.7
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 2.0e-186 656.0 400 78.2
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 2.6e-186 655.6 420 75.2
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 2.6e-186 655.6 420 75.2
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 4.4e-186 654.8 420 75.0
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 1.7e-185 652.9 420 75.0
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 1.7e-185 652.9 420 75.0
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 1.7e-185 652.9 402 76.1
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 3.7e-185 651.7 388 77.8
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 4.9e-185 651.4 393 76.6
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 1.1e-184 650.2 420 74.8
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 1.4e-184 649.8 422 75.1
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 1.9e-184 649.4 419 74.9
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 9.2e-184 647.1 409 74.6
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 1.0e-182 643.7 425 72.0
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 6.6e-182 641.0 417 73.1
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 8.6e-182 640.6 397 76.3
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 1.1e-181 640.2 392 76.8
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 4.3e-181 638.3 392 76.5
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 7.3e-181 637.5 420 72.9
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 1.6e-180 636.3 419 73.5
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 2.8e-180 635.6 420 73.6
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 2.8e-180 635.6 397 76.6
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 1.4e-179 633.3 420 73.1
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 2.4e-179 632.5 420 72.4
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 5.2e-179 631.3 419 73.5
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 1.2e-178 630.2 390 76.2
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 2.6e-178 629.0 411 74.7
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 1.3e-177 626.7 419 73.3
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 2.4e-176 622.5 417 72.2
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 4.1e-176 621.7 396 73.7
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 5.1e-174 614.8 393 75.1
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 1.1e-171 607.1 416 69.5
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 2.6e-170 602.4 317 89.6
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 3.5e-167 592.0 373 75.9
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 8.1e-164 580.9 374 74.1
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 4.0e-163 578.6 359 76.3
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 6.9e-163 577.8 350 77.4
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 2.9e-161 572.4 362 76.0
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 2.9e-161 572.4 400 66.8
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 3.8e-161 572.0 351 77.8
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 7.9e-159 564.3 354 77.1
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 2.6e-154 549.3 328 79.0
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 2.6e-154 549.3 401 64.6
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 4.9e-153 545.0 322 78.0
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 2.7e-151 539.3 333 74.8
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 1.9e-149 533.1 417 60.9
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 2.5e-149 532.7 319 76.5
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 5.6e-149 531.6 319 77.1
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 7.4e-149 531.2 409 60.9
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 4.9e-145 518.5 348 71.0
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 1.9e-141 506.5 396 58.8
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 2.4e-139 499.6 313 73.5
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 1.6e-135 486.9 268 86.2
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 2.7e-135 486.1 412 63.1
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 1.5e-133 480.3 275 81.1
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 5.9e-122 441.8 291 74.2
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 3.2e-112 409.5 422 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 3.6e-103 379.4 270 63.7
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 5.0e-97 359.0 427 45.2
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 9.5e-96 354.8 247 72.5
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 6.1e-95 352.1 278 64.7
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 2.6e-93 346.7 231 72.3
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 1.1e-83 314.7 181 82.9
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 2.1e-79 300.4 391 39.9
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 6.8e-70 268.9 354 40.1
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 2.1e-66 257.3 448 36.2
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 2.1e-58 230.7 322 41.6
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 7.6e-29 132.5 81 70.4
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 1.6e-26 124.8 95 67.4
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 3.9e-25 120.2 74 75.7
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 5.0e-20 103.2 95 62.1
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 2.5e-16 90.9 52 73.1
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 2.6e-13 80.9 88 53.4
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 2.5e-11 74.3 130 34.6
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 1.6e-10 71.6 60 63.3
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 1.5e-08 65.1 61 50.8
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.4e-06 57.8 88 42.0


User provided reference genes

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