Gene: Solyc04g054700.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g054700.3
  • Transcript Identifier Solyc04g054700.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 52360878-52368548 : negative

Gene Family Information

  • ID HOM05D006124
  • #Genes/#Species 129/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g054700.3.1
  • uniprot A0A3Q7G5L2
  • gene_id Solyc04g054700

Descriptions

  • Description General transcription factor IIH subunit (AHRD V3.3 *** A0A2G2XQE2_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006289
IBA
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005675
IBA
IEA
GOA Databasetranscription factor TFIIH holo complex
GO:0000439
IEA
GOA Databasetranscription factor TFIIH core complex
GO:0000439
IEA
InterProtranscription factor TFIIH core complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004595 TFIIH C1-like domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR002035 von Willebrand factor, type A
IPR007198 Ssl1-like
IPR012170 TFIIH subunit Ssl1/p44
IPR036465 von Willebrand factor A-like domain superfamily
Mapman id Description
14.6.3.2.2 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit SSL1
15.3.3.5.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL1