Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4W3SCV Arachis hypogaea HOM05D000246 ORTHO05D015415 2.4e-125 452.2 233 100.0
arahy.Tifrunner.gnm1.ann1.P64QHW Arachis hypogaea HOM05D000246 ORTHO05D005396 7.8e-92 340.9 206 89.3
arahy.Tifrunner.gnm1.ann1.V2A8TE Arachis hypogaea HOM05D000246 ORTHO05D005396 2.2e-86 322.8 206 86.4
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 1.3e-70 270.4 205 70.2
Duzib132G0704 Durio zibethinus HOM05D000246 ORTHO05D005396 7.1e-69 264.6 206 67.5
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 7.1e-69 264.6 210 69.0
Thecc.02G089200 Theobroma cacao HOM05D000246 ORTHO05D005396 2.7e-68 262.7 206 66.0
Haze_01763 Corylus avellana HOM05D000246 ORTHO05D005396 4.6e-68 261.9 206 66.5
TPR.G23583 Trifolium pratense HOM05D000246 ORTHO05D005396 1.3e-67 260.4 206 67.5
Glyma.12G170000 Glycine max HOM05D000246 ORTHO05D005396 2.3e-67 259.6 205 68.8
TPR.G2105 Trifolium pratense HOM05D000246 ORTHO05D005396 2.3e-67 259.6 206 67.0
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 3.9e-67 258.8 206 67.0
Potri.003G015800 Populus trichocarpa HOM05D000246 ORTHO05D005396 1.5e-66 256.9 206 66.0
CiPaw.05G049800 Carya illinoinensis HOM05D000246 ORTHO05D005396 9.6e-66 254.2 211 64.9
COL.COLO4_11771 Corchorus olitorius HOM05D000246 ORTHO05D005396 9.6e-66 254.2 207 65.7
Gohir.D13G034100 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.3e-65 253.8 208 63.9
Gorai.013G038600 Gossypium raimondii HOM05D000246 ORTHO05D005396 1.3e-65 253.8 208 64.4
VMungo0540G2260 Vigna mungo HOM05D000246 ORTHO05D005396 1.6e-65 253.4 205 66.8
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 2.8e-65 252.7 206 66.0
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 3.6e-65 252.3 206 65.0
QL02p099436 Quercus lobata HOM05D000246 ORTHO05D005396 3.6e-65 252.3 206 66.0
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 8.1e-65 251.1 206 66.0
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 8.1e-65 251.1 206 65.0
Sabra03G0008800 Salix brachista HOM05D000246 ORTHO05D005396 8.1e-65 251.1 206 65.0
Sabra03G0009400 Salix brachista HOM05D000246 ORTHO05D005396 1.8e-64 250.0 206 65.0
Manes.10G122800 Manihot esculenta HOM05D000246 ORTHO05D005396 2.4e-64 249.6 206 63.6
Sabra03G0009700 Salix brachista HOM05D000246 ORTHO05D005396 2.4e-64 249.6 206 65.0
Ciclev10000077m.g Citrus clementina HOM05D000246 ORTHO05D005396 4.0e-64 248.8 206 63.1
TAR624G1231 Trochodendron aralioides HOM05D000246 ORTHO05D005396 1.2e-63 247.3 206 62.6
Sabra03G0009100 Salix brachista HOM05D000246 ORTHO05D005396 2.0e-63 246.5 206 64.6
GSVIVG01023325001 Vitis vinifera HOM05D000246 ORTHO05D005396 1.7e-62 243.4 206 63.6
Migut.B00814 Erythranthe guttata HOM05D000246 ORTHO05D005396 1.9e-61 240.0 215 60.5
Sc10g0005930 Simmondsia chinensis HOM05D000246 ORTHO05D005396 2.4e-61 239.6 208 63.9
CsaV3_3G019190 Cucumis sativus L. HOM05D000246 ORTHO05D005396 4.2e-61 238.8 211 59.7
Nitab4.5_0001744g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 2.1e-60 236.5 206 61.2
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 4.6e-60 235.3 206 62.1
Nitab4.5_0008546g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 6.0e-60 235.0 207 60.9
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 6.0e-60 235.0 206 62.1
Sed0017184 Sechium edule HOM05D000246 ORTHO05D005396 1.0e-59 234.2 206 60.2
Cc02_g22770 Coffea canephora HOM05D000246 ORTHO05D005396 1.8e-59 233.4 206 60.7
Hma1.2p1_3213F.1_g334020 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.8e-59 233.4 196 63.8
CAN.G798.21 Capsicum annuum HOM05D000246 ORTHO05D005396 3.9e-59 232.3 206 61.2
MELO3C019447.2 Cucumis melo HOM05D000246 ORTHO05D005396 5.1e-59 231.9 206 59.2
Hma1.2p1_2221F.1_g317340 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 5.1e-59 231.9 206 61.2
MSTRG.16508 Avicennia marina HOM05D000246 ORTHO05D005396 1.1e-58 230.7 206 57.3
PGR042G0910 Punica granatum HOM05D000246 ORTHO05D005396 1.5e-58 230.3 207 60.9
CSS0032566 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 1.9e-58 229.9 206 62.1
CSS0044641 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 1.9e-58 229.9 206 62.1
MBI17_g20812_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 5.6e-58 228.4 198 60.1
Atru.chr6.555 Acer truncatum HOM05D000246 ORTHO05D005396 2.8e-57 226.1 199 61.8
Rhsim11G0127500 Rhododendron simsii HOM05D000246 ORTHO05D005396 3.7e-57 225.7 206 60.2
TWI59G0870 Tripterygium wilfordii HOM05D000246 ORTHO05D005396 6.2e-57 224.9 215 58.1
Eucgr.G00562 Eucalyptus grandis HOM05D000246 ORTHO05D005396 8.1e-57 224.6 206 60.2
Prupe.4G271400 Prunus persica HOM05D000246 ORTHO05D005396 2.4e-56 223.0 206 59.7
Actinidia39024 Actinidia chinensis HOM05D000246 ORTHO05D005396 9.0e-56 221.1 207 59.9
ECA234G4461 Erigeron canadensis HOM05D000246 ORTHO05D005396 1.2e-55 220.7 218 54.1
Oeu032246.1 Olea europaea HOM05D000246 ORTHO05D005396 1.5e-55 220.3 206 57.8
MD02G1262900 Malus domestica HOM05D000246 ORTHO05D005396 2.0e-55 219.9 206 59.7
Dinv24306 Davidia involucrata HOM05D000246 ORTHO05D005396 2.6e-55 219.5 176 65.3
PGSC0003DMG400023802 Solanum tuberosum HOM05D000246 ORTHO05D005396 2.6e-55 219.5 201 59.2
DCAR_006693 Daucus carota HOM05D000246 ORTHO05D005396 2.9e-54 216.1 206 58.3
Nn2g14796 Nelumbo nucifera HOM05D000246 ORTHO05D005396 2.9e-54 216.1 206 57.3
Peaxi162Scf00011g00639 Petunia axillaris HOM05D000246 ORTHO05D005396 4.9e-54 215.3 206 57.3
unitig_8.g4526 Utricularia gibba HOM05D000246 ORTHO05D005396 8.4e-54 214.5 207 54.1
Gohir.A13G035800 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.4e-53 213.8 177 63.8
Hund06556 Selenicereus undatus HOM05D000246 ORTHO05D005396 2.4e-53 213.0 216 59.7
COL.COLO4_11772 Corchorus olitorius HOM05D000246 ORTHO05D005396 9.3e-53 211.1 176 64.8
MD07G1057400 Malus domestica HOM05D000246 ORTHO05D005396 9.3e-53 211.1 205 58.0
HanXRQChr10g0298131 Helianthus annuus HOM05D000246 ORTHO05D005396 2.1e-52 209.9 207 57.0
Carub.0001s1051 Capsella rubella HOM05D000246 ORTHO05D005396 3.5e-52 209.1 211 55.0
arahy.Tifrunner.gnm1.ann1.9F5B0U Arachis hypogaea HOM05D000246 ORTHO05D005396 4.6e-52 208.8 218 57.3
CARHR011150 Cardamine hirsuta HOM05D000246 ORTHO05D005396 7.9e-52 208.0 211 55.0
FAN04G2409 Fragaria x ananassa HOM05D000246 ORTHO05D005396 7.9e-52 208.0 207 58.5
AL1G21910 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 1.3e-51 207.2 211 54.5
THA.LOC104809610 Tarenaya hassleriana HOM05D000246 ORTHO05D005396 1.3e-51 207.2 214 54.7
FvH4_5g28920 Fragaria vesca HOM05D000246 ORTHO05D005396 3.0e-51 206.1 207 58.0
FAN18G0190 Fragaria x ananassa HOM05D000246 ORTHO05D005396 3.0e-51 206.1 207 58.0
RcHm_v2.0_Chr7g0221231 Rosa chinensis HOM05D000246 ORTHO05D005396 3.0e-51 206.1 206 58.3
AT1G10930 Arabidopsis thaliana HOM05D000246 ORTHO05D005396 5.1e-51 205.3 211 54.0
Sp1g09640 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.9e-50 203.4 211 54.5
vmacro01744 Vaccinium macrocarpon HOM05D000246 ORTHO05D005396 1.9e-50 203.4 249 49.0
Aqoxy5G02652 Aquilegia oxysepala HOM05D000246 ORTHO05D005396 3.3e-50 202.6 219 52.5
Lsat_1_v5_gn_5_105701 Lactuca sativa HOM05D000246 ORTHO05D005396 4.3e-50 202.2 208 53.8
Lsat_1_v5_gn_9_121000 Lactuca sativa HOM05D000246 ORTHO05D005396 5.6e-50 201.8 216 55.1
HanXRQChr03g0065231 Helianthus annuus HOM05D000246 ORTHO05D005396 7.4e-50 201.4 208 54.8
A08p33740 Brassica napus HOM05D000246 ORTHO05D005396 1.6e-49 200.3 212 54.2
C08p14030 Brassica napus HOM05D000246 ORTHO05D005396 1.6e-49 200.3 212 54.2
BolC8t49040H Brassica oleracea HOM05D000246 ORTHO05D005396 1.6e-49 200.3 212 54.2
Thhalv10006602m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 1.6e-49 200.3 211 53.6
A09p64760 Brassica napus HOM05D000246 ORTHO05D005396 2.8e-49 199.5 211 54.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 6.2e-49 198.4 211 54.0
BraA09t41819Z Brassica rapa HOM05D000246 ORTHO05D005396 6.2e-49 198.4 211 53.6
C08p48440 Brassica napus HOM05D000246 ORTHO05D005396 8.2e-49 198.0 211 54.0
CDE08G1044 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 8.2e-49 198.0 206 52.9
BcaNung06376 Brassica carinata HOM05D000246 ORTHO05D005396 1.1e-48 197.6 211 53.6
BolC8t52382H Brassica oleracea HOM05D000246 ORTHO05D005396 1.8e-48 196.8 211 53.6
CANSAT11G0299 Cannabis sativa HOM05D000246 ORTHO05D005396 1.8e-48 196.8 206 53.4
BcaC07g38599 Brassica carinata HOM05D000246 ORTHO05D005396 2.4e-48 196.4 212 53.8
ATR0071G007 Amborella trichopoda HOM05D000246 ORTHO05D005396 3.1e-48 196.1 203 53.7
BraA08t35290Z Brassica rapa HOM05D000246 ORTHO05D005396 5.3e-48 195.3 225 51.1
HPP92_004440 Vanilla planifolia HOM05D000246 ORTHO05D005396 1.5e-47 193.7 206 51.5
Lj5C254G21 Lonicera japonica HOM05D000246 ORTHO05D005396 2.0e-47 193.4 185 57.8
SGA_v2.0_scaffold110G31337 Striga asiatica HOM05D000246 ORTHO05D005396 2.0e-47 193.4 223 51.1
PSO017G1629 Papaver somniferum HOM05D000246 ORTHO05D005396 2.2e-46 189.9 224 50.0
Aa31LG1G3940 Aethionema arabicum HOM05D000246 ORTHO05D005396 4.9e-46 188.7 215 50.2
A09p17030 Brassica napus HOM05D000246 ORTHO05D005396 1.4e-45 187.2 215 51.6
BraA09t37338Z Brassica rapa HOM05D000246 ORTHO05D005396 1.4e-45 187.2 215 51.6
BcaC04g22293 Brassica carinata HOM05D000246 ORTHO05D005396 3.2e-45 186.0 215 50.2
C09p21060 Brassica napus HOM05D000246 ORTHO05D005396 3.2e-45 186.0 215 50.2
BolC9t55007H Brassica oleracea HOM05D000246 ORTHO05D005396 3.2e-45 186.0 215 50.2
FAN08G0442 Fragaria x ananassa HOM05D000246 ORTHO05D005396 5.5e-45 185.3 197 54.8
Thhalv10023226m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 3.5e-44 182.6 215 49.8
FAN13G0468 Fragaria x ananassa HOM05D000246 ORTHO05D005396 3.5e-44 182.6 269 45.0
Dinv19386 Davidia involucrata HOM05D000246 ORTHO05D005396 4.6e-44 182.2 159 64.8
CARHR051950 Cardamine hirsuta HOM05D000246 ORTHO05D005396 3.0e-43 179.5 206 50.5
BcaB07g31246 Brassica carinata HOM05D000246 ORTHO05D005396 8.7e-43 177.9 215 50.2
SEGI_17577 Sequoiadendron giganteum HOM05D000246 ORTHO05D005396 4.3e-42 175.6 207 48.8
SEGI_22596 Sequoiadendron giganteum HOM05D000246 ORTHO05D005396 4.3e-42 175.6 207 48.8
AL2G15560 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 5.7e-42 175.3 215 48.4
EL10Ac9g21897 Beta vulgaris HOM05D000246 ORTHO05D005396 1.6e-41 173.7 199 52.3
AUR62011515 Chenopodium quinoa HOM05D000246 ORTHO05D005396 2.2e-41 173.3 201 50.2
AUR62016334 Chenopodium quinoa HOM05D000246 ORTHO05D005396 2.8e-41 172.9 210 48.6
Sp2g03660 Schrenkiella parvula HOM05D000246 ORTHO05D005396 8.2e-41 171.4 215 48.4
Carub.0002s0433 Capsella rubella HOM05D000246 ORTHO05D005396 1.8e-40 170.2 206 48.1
arahy.Tifrunner.gnm1.ann1.GBY9UZ Arachis hypogaea HOM05D000246 ORTHO05D005396 4.1e-40 169.1 123 76.4
BcaC05g24973 Brassica carinata HOM05D000246 ORTHO05D005396 1.2e-39 167.5 242 46.3
SGA_v2.0_scaffold131G34453 Striga asiatica HOM05D000246 ORTHO05D005396 4.5e-39 165.6 210 48.6
Os04g0433800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005396 7.6e-39 164.9 199 49.7
Zm00001eb231860 Zea mays HOM05D000246 ORTHO05D005396 2.2e-38 163.3 206 48.1
CDE04G0206 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 3.8e-38 162.5 181 49.7
Mapoly0070s0053 Marchantia polymorpha HOM05D000246 ORTHO05D005396 1.0e-35 154.5 205 44.9
arahy.Tifrunner.gnm1.ann1.J1FRWC Arachis hypogaea HOM05D000246 ORTHO05D005396 1.9e-34 150.2 248 44.0
Pp3c2_1760 Physcomitrium patens HOM05D000246 ORTHO05D005396 1.2e-31 141.0 214 41.1
Ah.01g020570 Amaranthus hybridus HOM05D000246 ORTHO05D005396 8.5e-30 134.8 171 49.1
Cpa.g.sc31.51 Carica papaya HOM05D000246 ORTHO05D005396 1.2e-28 131.0 92 76.1
SMO116G0385 Selaginella moellendorffii HOM05D000246 ORTHO05D005396 2.3e-27 126.7 202 38.1
Cpa.g.sc31.48 Carica papaya HOM05D000246 ORTHO05D005396 3.3e-26 122.9 104 57.7
CBR_g34731 Chara braunii HOM05D000246 ORTHO05D005396 4.8e-25 119.0 216 38.0
PSO017G3390 Papaver somniferum HOM05D000246 ORTHO05D015415 1.1e-24 117.9 167 46.7
PSO724G0359 Papaver somniferum HOM05D000246 ORTHO05D015415 1.4e-24 117.5 167 46.1
SHI16631 Sapria himalayana HOM05D000246 ORTHO05D005396 1.4e-24 117.5 92 70.7
PSO729G0088 Papaver somniferum HOM05D000246 ORTHO05D015415 4.2e-21 105.9 175 44.6
AagrBONN_evm.TU.Sc2ySwM_344.3354 Anthoceros agrestis HOM05D000246 ORTHO05D005396 1.5e-18 97.4 143 39.9
AagrBONN_evm.TU.Sc2ySwM_362.2589 Anthoceros agrestis HOM05D000246 ORTHO05D005396 9.1e-16 88.2 170 34.1
Cre04.g219750 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005396 2.0e-10 70.5 107 38.3
vmacro01746 Vaccinium macrocarpon HOM05D000246 ORTHO05D005396 4.4e-10 69.3 70 45.7
AL7G20370 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 1.3e-09 67.8 100 37.0
SHI16634 Sapria himalayana HOM05D000246 ORTHO05D005396 2.2e-09 67.0 77 46.8
MBI17_g38774_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 4.5e-07 59.3 50 46.0
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.0e-06 58.2 104 37.5
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 3.8e-06 56.2 61 42.6
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 3.8e-06 56.2 61 42.6
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 5.0e-06 55.8 61 41.0
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 5.0e-06 55.8 61 42.6


User provided reference genes

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