Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 0.0e+00 1449.5 742 100.0
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 0.0e+00 1418.7 742 97.0
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 0.0e+00 1393.3 742 96.2
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 5.3e-259 897.9 746 64.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.1e-251 873.6 746 62.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 7.9e-247 857.4 735 62.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.9e-230 802.0 739 60.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.7e-225 786.6 745 57.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 9.7e-205 717.6 729 56.8
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 4.1e-203 712.2 747 53.9
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 3.2e-200 702.6 737 54.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 8.8e-198 694.5 760 53.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.1e-195 687.6 732 53.4
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.9e-193 679.5 759 50.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.8e-193 679.1 759 50.7
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-191 673.7 724 53.0
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.0e-182 642.5 754 49.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 8.9e-182 641.3 759 49.1
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 9.8e-181 637.9 751 48.7
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 6.4e-180 635.2 882 46.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.0e-177 626.3 761 48.6
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.3e-176 622.9 756 48.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.8e-175 619.8 774 48.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.8e-175 619.8 739 49.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.7e-175 619.0 727 49.5
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 8.0e-175 618.2 765 47.6
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 8.6e-169 598.2 755 48.1
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.5e-168 597.4 742 47.7
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.7e-167 592.4 608 55.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.1e-166 591.3 768 46.2
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 8.9e-166 588.2 751 47.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.0e-165 587.0 760 47.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 9.9e-165 584.7 752 47.1
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 9.9e-165 584.7 731 46.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.4e-163 580.1 751 47.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.6e-162 577.4 751 46.9
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 5.1e-161 572.4 719 47.6
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.1e-160 571.2 761 46.6
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.9e-160 570.5 759 45.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.5e-160 570.1 735 47.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 7.3e-160 568.5 776 44.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.2e-159 567.8 759 44.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.2e-158 562.4 730 45.6
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.2e-157 561.2 744 46.8
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.3e-156 557.8 748 45.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.4e-156 555.4 761 44.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.4e-155 553.5 761 44.3
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.7e-154 550.1 631 50.6
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.1e-151 540.4 767 44.3
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 6.9e-150 535.4 712 47.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 3.4e-149 533.1 724 44.5
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.6e-149 531.9 732 44.0
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 4.9e-148 529.3 739 44.7
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.9e-147 527.3 744 43.0
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 5.4e-147 525.8 743 45.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-146 524.6 747 42.4
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.7e-146 523.5 728 43.0
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.3e-145 521.2 762 43.0
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.3e-145 520.4 718 43.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.0e-145 520.0 734 43.7
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.7e-145 518.5 751 42.3
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.5e-144 517.7 762 43.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.3e-144 516.5 739 43.2
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 8.1e-143 511.9 724 43.0
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.8e-142 510.8 709 46.1
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.5e-141 507.7 750 44.0
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.5e-141 507.7 742 42.7
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.6e-141 505.4 724 43.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 9.9e-141 505.0 724 42.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 6.4e-140 502.3 716 42.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.3e-137 493.8 771 40.5
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.3e-137 493.8 802 40.8
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 3.3e-136 490.0 737 41.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.3e-135 488.0 385 69.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.3e-135 488.0 729 42.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 5.3e-134 482.6 733 40.5
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.9e-132 476.1 736 40.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.5e-131 473.8 755 40.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 4.2e-131 473.0 763 41.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.2e-130 471.5 707 42.0
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 6.0e-130 469.2 749 41.7
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 6.0e-130 469.2 724 40.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.9e-130 468.8 719 42.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.0e-129 468.4 724 40.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.0e-129 468.4 540 51.9
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.5e-128 464.5 728 40.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 4.3e-128 463.0 769 39.4
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.4e-128 462.2 716 41.9
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.3e-124 451.4 428 55.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.5e-122 443.4 551 47.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 7.9e-122 442.2 747 39.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.3e-121 440.7 732 39.1
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.3e-121 440.7 565 46.7
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.1e-121 439.5 614 45.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.1e-118 430.3 726 39.1
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.8e-116 423.3 740 37.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.5e-116 422.5 736 38.0
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 6.5e-116 422.5 743 37.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.4e-115 421.4 736 37.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.2e-115 419.9 742 37.9
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 7.2e-115 419.1 743 37.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.0e-113 413.7 589 42.3
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.5e-112 410.6 746 36.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.3e-111 408.3 438 49.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.9e-108 397.1 701 37.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-105 387.5 709 37.2
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.9e-105 386.7 547 44.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.0e-102 375.9 469 48.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.6e-101 374.0 720 35.6
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 2.1e-98 364.4 504 45.4
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 5.2e-97 359.8 698 36.1
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.4e-96 356.7 752 34.2
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 3.2e-91 340.5 582 41.1
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.7e-90 336.7 740 33.6
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 4.4e-88 330.1 446 43.7
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.8e-87 327.4 364 49.7
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 8.3e-87 325.9 710 33.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.9e-84 317.4 499 41.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 7.2e-75 286.2 378 47.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.3e-73 281.2 380 41.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.9e-71 274.2 760 31.2
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 7.0e-70 269.6 738 29.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 7.8e-69 266.2 299 48.8
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.5e-59 232.6 563 32.1
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.1e-57 229.2 819 27.5
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.1e-52 210.3 783 26.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.6e-50 204.1 174 58.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.3e-49 201.4 398 36.7
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.2e-46 191.0 215 50.2
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.1e-43 182.6 143 59.4
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.0e-40 171.8 252 41.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.4e-40 170.6 280 36.8
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-38 166.0 239 41.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.4e-38 163.7 280 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-34 152.5 741 24.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.1e-34 151.8 124 65.3
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.0e-33 146.4 124 64.5
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.5e-32 145.6 142 52.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 7.6e-32 143.3 528 25.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-27 129.0 208 38.5
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 2.8e-26 124.8 73 84.9
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-24 119.4 110 58.2
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 8.4e-23 113.2 149 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-19 102.1 202 33.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.9e-15 88.2 367 24.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-14 85.9 334 27.5
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.2e-14 84.7 144 38.9
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 5.5e-14 84.0 177 35.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.0e-12 79.7 150 33.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.5e-11 75.1 229 28.8
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-10 72.8 60 50.0
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.4e-09 69.3 113 40.7
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.4e-09 68.6 71 50.7
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.0e-08 65.5 60 53.3
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 4.5e-08 64.3 182 25.8
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 5.9e-08 63.9 67 52.2
Glyma.12G037602 Glycine max HOM05D001988 ORTHO05D004985 5.9e-08 63.9 88 48.9
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 3.8e-07 61.2 77 49.4
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 3.8e-07 61.2 204 29.4


User provided reference genes

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