Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 0.0e+00 1329.7 700 100.0
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 0.0e+00 1317.4 704 99.3
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 0.0e+00 1143.6 711 86.1
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 0.0e+00 1141.7 714 85.4
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 0.0e+00 1112.4 712 84.6
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 0.0e+00 1109.4 714 83.5
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 0.0e+00 1090.5 717 82.4
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 0.0e+00 1089.3 701 83.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1080.5 723 79.5
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 1.6e-305 1052.4 728 78.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.7e-304 1048.9 725 77.0
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 3.9e-304 1047.7 775 72.8
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 3.3e-303 1044.6 725 77.4
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 5.2e-301 1037.3 711 77.9
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.0e-300 1035.4 733 76.0
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 1.9e-298 1028.9 730 77.1
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 9.3e-298 1026.5 725 76.8
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.7e-297 1025.0 706 78.9
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 3.9e-296 1021.1 723 76.3
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.5e-295 1018.5 687 78.6
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.6e-294 1015.8 723 75.7
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 2.8e-294 1015.0 726 75.5
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.8e-294 1015.0 723 75.4
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 2.8e-294 1015.0 718 75.2
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 3.6e-294 1014.6 724 74.6
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 8.1e-294 1013.4 744 75.4
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 9.0e-293 1010.0 717 75.5
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 6.4e-291 1003.8 731 75.8
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.9e-290 1002.3 726 74.5
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.7e-289 998.4 727 74.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 3.5e-289 998.0 733 74.5
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.5e-289 998.0 729 74.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.0e-289 997.3 727 74.6
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 7.9e-289 996.9 739 73.2
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.5e-287 992.6 727 75.5
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.3e-286 989.6 708 74.2
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 4.0e-285 984.6 719 75.2
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 6.9e-285 983.8 727 74.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 3.4e-284 981.5 725 72.8
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.7e-283 979.2 718 74.2
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 3.8e-283 978.0 725 73.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 8.4e-283 976.9 703 75.0
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.2e-282 974.9 703 75.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 4.2e-282 974.5 636 79.6
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 7.1e-282 973.8 726 72.5
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 7.1e-282 973.8 683 76.3
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 1.3e-280 969.5 722 73.3
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.3e-280 969.5 717 73.8
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.1e-280 967.6 719 73.2
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 6.7e-280 967.2 635 78.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 8.7e-280 966.8 719 72.0
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.1e-279 966.5 719 73.2
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.6e-278 962.6 730 71.2
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 2.1e-278 962.2 723 73.4
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 2.8e-278 961.8 606 81.2
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 2.4e-277 958.7 703 75.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 6.9e-277 957.2 743 70.0
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 9.0e-277 956.8 739 70.0
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 7.6e-276 953.7 633 78.5
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.3e-275 953.0 632 78.2
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 2.2e-275 952.2 727 73.7
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.8e-275 951.4 718 72.0
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.5e-273 944.9 743 69.9
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 3.9e-272 941.4 790 68.5
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 8.7e-272 940.3 635 77.5
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.9e-271 939.1 636 77.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.4e-271 937.2 721 69.2
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 7.4e-271 937.2 718 72.6
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 1.8e-269 932.6 562 81.1
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 2.4e-269 932.2 644 76.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.3e-269 931.0 710 72.4
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.5e-268 929.5 715 70.5
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 2.6e-268 928.7 646 75.7
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.0e-267 926.8 717 67.9
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.3e-267 926.4 638 76.2
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.5e-266 922.2 667 73.3
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.0e-264 916.8 683 69.4
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.8e-264 916.0 680 71.8
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 4.3e-263 911.4 520 83.7
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 9.7e-263 910.2 500 87.6
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.8e-262 908.7 654 72.6
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 8.2e-262 907.1 707 68.0
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 5.3e-261 904.4 716 67.0
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.7e-259 899.4 642 75.7
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.3e-256 889.0 703 67.7
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 8.8e-256 887.1 726 69.4
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 2.2e-254 882.5 472 90.9
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.8e-253 879.4 622 74.3
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 5.3e-253 877.9 730 69.5
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.2e-251 872.5 739 67.5
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 4.8e-246 854.7 719 64.5
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.1e-241 839.3 713 66.9
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.5e-236 821.6 759 60.6
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.3e-230 801.2 624 71.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.7e-228 795.8 732 63.3
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.5e-228 795.0 653 64.6
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 8.6e-219 764.2 561 66.7
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 6.8e-216 754.6 690 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.2e-209 733.8 676 60.2
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 2.8e-201 706.1 496 67.9
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.8e-196 688.0 399 82.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.1e-184 651.0 337 90.5
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 4.8e-177 625.5 541 57.1
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 7.1e-173 611.7 471 61.4
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.2e-172 610.9 365 82.7
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.9e-170 603.6 639 56.5
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.6e-169 599.4 549 65.6
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 5.3e-168 595.5 471 60.7
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.0e-150 535.8 539 60.9
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 2.3e-131 473.8 500 50.2
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 5.9e-127 459.1 529 52.0
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.4e-123 448.0 562 44.7
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.6e-119 434.5 251 78.9
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 5.7e-114 416.0 551 44.3
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.6e-103 381.3 514 39.5
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.6e-98 364.0 374 62.8
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.9e-97 359.8 214 80.8
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 6.4e-89 332.8 176 88.1
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.7e-86 324.7 263 65.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.4e-72 278.5 157 82.8
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.8e-67 261.5 362 54.7
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.4e-59 235.3 163 69.3
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.0e-59 233.8 234 65.8
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.5e-58 231.9 233 65.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-50 205.3 301 46.5
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.2e-40 171.0 94 85.1
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 6.1e-31 140.2 105 73.3
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.3e-29 134.4 95 72.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.8e-28 131.3 292 38.7
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 4.2e-24 117.5 76 78.9
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 6.1e-23 113.6 218 50.5
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 8.5e-17 93.2 50 92.0
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 9.4e-16 89.7 198 52.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.9e-14 84.3 194 37.6
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.0e-11 73.6 154 37.7
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.5e-10 71.2 154 37.0
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 1.4e-06 59.3 70 67.1
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.4e-06 59.3 76 44.7


User provided reference genes

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