Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 8.4e-198 693.7 415 100.0
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 9.3e-189 663.7 415 95.2
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 6.3e-153 544.7 415 72.0
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 6.3e-153 544.7 382 83.0
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 8.3e-153 544.3 415 73.5
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 3.1e-152 542.3 416 72.8
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 3.1e-152 542.3 381 78.2
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 5.4e-152 541.6 394 82.5
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 2.2e-150 536.2 415 69.4
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 3.8e-150 535.4 396 81.6
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 2.3e-139 499.6 394 68.8
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 5.2e-139 498.4 403 67.5
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 2.2e-137 493.0 391 70.6
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.4e-136 490.3 392 70.7
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.8e-136 490.0 393 65.9
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.8e-136 490.0 393 65.9
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 1.8e-136 490.0 392 69.4
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 3.2e-136 489.2 374 75.4
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 4.1e-136 488.8 393 71.8
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 4.1e-136 488.8 391 67.0
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 5.4e-136 488.4 371 69.3
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 9.2e-136 487.6 393 71.5
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 2.0e-135 486.5 371 69.3
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 5.9e-135 485.0 403 68.5
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 2.3e-134 483.0 385 69.6
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 2.5e-133 479.6 377 71.6
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 2.8e-132 476.1 396 68.7
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 3.6e-132 475.7 418 68.4
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 6.2e-132 474.9 371 68.2
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 1.4e-131 473.8 399 73.2
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 1.8e-131 473.4 377 71.6
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 4.0e-131 472.2 392 65.1
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 4.0e-131 472.2 389 67.1
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 3.4e-130 469.2 391 68.5
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 1.7e-129 466.8 378 73.5
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 1.7e-129 466.8 401 70.6
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 2.4e-128 463.0 399 67.7
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 4.1e-128 462.2 397 67.0
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 1.6e-127 460.3 373 74.8
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 3.5e-127 459.1 388 63.1
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.3e-126 457.2 391 66.8
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 1.1e-125 454.1 412 68.7
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 5.6e-125 451.8 403 62.8
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 1.2e-124 450.7 374 66.0
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 2.1e-124 449.9 395 66.3
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 1.1e-123 447.6 392 63.8
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 1.8e-123 446.8 394 63.5
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 1.8e-123 446.8 366 67.2
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 2.3e-123 446.4 389 65.3
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 3.1e-123 446.0 395 64.8
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 4.0e-123 445.7 384 64.3
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 4.0e-123 445.7 384 64.3
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 6.8e-123 444.9 392 61.0
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 2.0e-122 443.4 374 68.7
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 2.0e-122 443.4 395 69.4
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 3.4e-122 442.6 402 62.4
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 4.4e-122 442.2 392 61.5
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 5.8e-122 441.8 392 61.5
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 5.8e-122 441.8 392 61.5
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 5.8e-122 441.8 369 70.7
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 9.8e-122 441.0 380 68.9
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 2.9e-121 439.5 428 58.2
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 6.4e-121 438.3 390 61.0
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.2e-119 434.1 373 64.6
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 2.1e-119 433.3 409 63.8
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 2.1e-119 433.3 310 75.8
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 2.1e-119 433.3 437 58.8
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 4.6e-119 432.2 380 71.3
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 3.9e-118 429.1 292 75.3
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 1.5e-117 427.2 383 61.9
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 9.5e-117 424.5 383 60.1
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 4.7e-116 422.2 380 60.3
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 6.2e-116 421.8 403 62.0
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 4.4e-114 415.6 378 60.3
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 5.8e-114 415.2 389 58.4
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 2.9e-113 412.9 386 61.1
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 2.9e-113 412.9 381 59.8
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.9e-112 410.2 298 77.2
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 5.4e-112 408.7 309 67.0
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.2e-111 407.5 305 67.9
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 1.6e-111 407.1 392 58.2
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 1.1e-109 401.0 233 85.0
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 2.5e-109 399.8 421 60.3
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 4.7e-108 395.6 252 82.9
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 3.1e-107 392.9 284 80.6
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 1.2e-106 391.0 295 68.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 4.4e-106 389.0 292 69.5
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 5.8e-106 388.7 373 57.9
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 2.4e-104 383.3 283 70.0
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 2.7e-103 379.8 402 55.2
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 3.5e-103 379.4 288 69.8
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 5.1e-102 375.6 380 58.7
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 5.6e-101 372.1 291 67.4
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 8.1e-100 368.2 285 67.7
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 4.0e-99 365.9 379 59.9
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.8e-92 342.4 276 67.8
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 8.1e-92 341.7 264 68.9
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.4e-91 340.9 406 48.8
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 2.0e-90 337.0 207 79.2
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 9.3e-88 328.2 361 58.4
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 2.3e-86 323.6 416 53.6
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.3e-84 317.8 283 58.3
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 6.2e-84 315.5 401 52.1
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.2e-82 311.2 331 56.5
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 4.5e-82 309.3 230 70.4
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.8e-78 297.4 215 73.0
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 9.6e-77 291.6 394 48.0
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 5.5e-72 275.8 146 87.0
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 6.5e-65 252.3 243 59.7
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 2.0e-61 240.7 268 48.5
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 7.4e-61 238.8 294 51.7
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.8e-60 236.1 274 52.9
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 6.3e-60 235.7 208 54.8
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 2.9e-41 173.7 187 47.1
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 7.2e-40 169.1 308 33.8
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 5.9e-34 149.4 164 58.5
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 8.0e-31 139.0 212 37.3
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 2.8e-28 130.6 86 81.4
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 5.9e-26 122.9 135 49.6
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 8.3e-12 75.9 43 76.7
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 1.1e-08 65.5 100 43.0
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 3.3e-08 63.9 34 82.4
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 4.3e-08 63.5 137 38.7


User provided reference genes

Program Settings