Gene: Pp3c6_29610
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c6_29610
- Transcript Identifier Pp3c6_29610V3.1
- Gene Type Coding gene
- Location Chr06 : 19339659-19342480 : positive
Gene Family Information
- ID HOM05D006305
- #Genes/#Species 126/96
- Phylogenetic origin
- ID ORTHO05D007984
- #Genes/#Species 124/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c6_29610V3.1
- pacid 32977142
- alias Pp1s117_170V6
- alias Phypa_14858
- alias Phpat.006G106900
- uniprot A0A2K1KHM0
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000724 | IEA | GOA Database | double-strand break repair via homologous recombination | |
| GO:0010332 | IEA | GOA Database | response to gamma radiation | |
| GO:0010224 | IEA | GOA Database | response to UV-B | |
| GO:0006294 | IEA | GOA Database | nucleotide-excision repair, preincision complex assembly | |
| GO:0010213 | IEA | GOA Database | non-photoreactive DNA repair | |
| GO:0000710 | IBA | GOA Database | meiotic mismatch repair | |
| GO:0006312 | IBA | GOA Database | mitotic recombination | |
| GO:0006296 | IBA | GOA Database | nucleotide-excision repair, DNA incision, 5'-to lesion | |
| GO:0070914 | IBA | GOA Database | UV-damage excision repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0017108 | IEA | GOA Database | 5'-flap endonuclease activity | |
| GO:0003684 | IBA IEA | GOA Database | damaged DNA binding | |
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0003697 | IBA | GOA Database | single-stranded DNA binding | |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000110 | IBA | GOA Database | nucleotide-excision repair factor 1 complex | |
| GO:0070522 | IBA | GOA Database | ERCC4-ERCC1 complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 14.6.4.2 | DNA damage response.nucleotide excision repair (NER).XPF-ERCC1 DNA repair endonuclease complex.scaffolding component ERCC1 |