Gene: Sopen03g034570

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g034570
  • Transcript Identifier Sopen03g034570.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 69685070-69688666 : negative

Gene Family Information

  • ID HOM05D006305
  • #Genes/#Species 126/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g034570.1

Descriptions

  • Description encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5 end of damaged DNA, similar to ERCC1/RAD10. | ERCC1 | FUNCTIONS IN: 5-flap endonuclease activity | INVOLVED IN: in 6 processes | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 , DNA repair protein rad10 , RuvA domain 2-like
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006294
ISO
PLAZA Integrative Orthologynucleotide-excision repair, preincision complex assembly AT3G05210
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT3G05210
GO:0010332
ISO
PLAZA Integrative Orthologyresponse to gamma radiation AT3G05210
GO:0010213
ISO
PLAZA Integrative Orthologynon-photoreactive DNA repair AT3G05210
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT3G05210

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IEA
InterProdamaged DNA binding
GO:0017108
ISO
PLAZA Integrative Orthology5'-flap endonuclease activity AT3G05210

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR004579 ERCC1/RAD10/SWI10 family
IPR011335 Restriction endonuclease type II-like
IPR010994 RuvA domain 2-like
Mapman id Description
14.6.4.2 DNA damage response.nucleotide excision repair (NER).XPF-ERCC1 DNA repair endonuclease complex.scaffolding component ERCC1