Gene: Solyc03g115580.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g115580.4
  • Transcript Identifier Solyc03g115580.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 59660807-59664472 : negative

Gene Family Information

  • ID HOM05D006305
  • #Genes/#Species 126/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g115580.4.1
  • uniprot A0A3Q7FR03
  • gene_id Solyc03g115580

Descriptions

  • Description DNA excision repair protein ERCC-1 (AHRD V3.3 *** A0A2G3A240_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT3G05210
GO:0010213
ISO
PLAZA Integrative Orthologynon-photoreactive DNA repair AT3G05210
GO:0010332
ISO
PLAZA Integrative Orthologyresponse to gamma radiation AT3G05210
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT3G05210
GO:0006294
ISO
PLAZA Integrative Orthologynucleotide-excision repair, preincision complex assembly AT3G05210
GO:0000710
IBA
GOA Databasemeiotic mismatch repair
GO:0006312
IBA
GOA Databasemitotic recombination
GO:0006296
IBA
GOA Databasenucleotide-excision repair, DNA incision, 5'-to lesion
GO:0070914
IBA
GOA DatabaseUV-damage excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017108
ISO
PLAZA Integrative Orthology5'-flap endonuclease activity AT3G05210
GO:0003684
IBA
IEA
GOA Databasedamaged DNA binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0003697
IBA
GOA Databasesingle-stranded DNA binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000110
IBA
GOA Databasenucleotide-excision repair factor 1 complex
GO:0070522
IBA
GOA DatabaseERCC4-ERCC1 complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004579 ERCC1/RAD10/SWI10 family
IPR011335 Restriction endonuclease type II-like
IPR010994 RuvA domain 2-like
Mapman id Description
14.6.4.2 DNA damage response.nucleotide excision repair (NER).XPF-ERCC1 DNA repair endonuclease complex.scaffolding component ERCC1