Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.29RT0M Arachis hypogaea HOM05D005655 ORTHO05D007386 6.2e-54 213.8 100 100.0
arahy.Tifrunner.gnm1.ann1.15WA1E Arachis hypogaea HOM05D005655 ORTHO05D007386 2.3e-32 142.1 108 68.5
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 3.8e-27 124.8 116 59.5
Lj5g0012902 Lotus japonicus HOM05D005655 ORTHO05D007386 4.9e-27 124.4 115 55.7
Glyma.20G171700 Glycine max HOM05D005655 ORTHO05D007386 1.9e-26 122.5 119 55.5
arahy.Tifrunner.gnm1.ann1.A75B0U Arachis hypogaea HOM05D005655 ORTHO05D007386 4.2e-26 121.3 116 58.6
Glyma.10G220000 Glycine max HOM05D005655 ORTHO05D007386 4.6e-25 117.9 119 52.9
VMungo0720G1747 Vigna mungo HOM05D005655 ORTHO05D007386 4.6e-25 117.9 131 48.1
Phvul.007G085300 Phaseolus vulgaris HOM05D005655 ORTHO05D007386 7.8e-25 117.1 137 47.4
Psat6g189760 Pisum sativum HOM05D005655 ORTHO05D007386 6.6e-24 114.0 132 47.0
Lalb_Chr02g0141651 Lupinus albus HOM05D005655 ORTHO05D007386 2.8e-22 108.6 114 50.9
GSVIVG01013676001 Vitis vinifera HOM05D005655 ORTHO05D007386 3.6e-22 108.2 120 47.5
TPR.G23158 Trifolium pratense HOM05D005655 ORTHO05D007386 1.2e-20 103.2 115 48.7
Ca_10644_v3 Cicer arietinum L. HOM05D005655 ORTHO05D007386 2.6e-20 102.1 115 47.0
Prupe.8G045000 Prunus persica HOM05D005655 ORTHO05D007386 3.4e-20 101.7 110 48.2
Cfa018255 Carpinus fangiana HOM05D005655 ORTHO05D007386 4.5e-20 101.3 114 46.5
Haze_17834 Corylus avellana HOM05D005655 ORTHO05D007386 1.3e-19 99.8 114 45.6
Haze_17840 Corylus avellana HOM05D005655 ORTHO05D007386 1.3e-19 99.8 114 45.6
Medtr1g097390 Medicago truncatula HOM05D005655 ORTHO05D007386 4.9e-19 97.8 111 47.7
Ciclev10001190m.g Citrus clementina HOM05D005655 ORTHO05D007386 6.4e-19 97.4 114 48.2
Duzib093G0465 Durio zibethinus HOM05D005655 ORTHO05D007386 1.4e-18 96.3 112 46.4
Cpa.g.sc26.127 Carica papaya HOM05D005655 ORTHO05D007386 1.9e-18 95.9 118 44.9
Manes.02G186000 Manihot esculenta HOM05D005655 ORTHO05D007386 1.9e-18 95.9 112 46.4
PGR042G2919 Punica granatum HOM05D005655 ORTHO05D007386 1.9e-18 95.9 126 41.3
COL.COLO4_13720 Corchorus olitorius HOM05D005655 ORTHO05D007386 1.2e-17 93.2 114 43.9
CiPaw.15G011200 Carya illinoinensis HOM05D005655 ORTHO05D007386 1.6e-17 92.8 117 42.7
Dinv41018 Davidia involucrata HOM05D005655 ORTHO05D007386 1.6e-17 92.8 111 44.1
Atru.chr13.1965 Acer truncatum HOM05D005655 ORTHO05D007386 2.1e-17 92.4 150 39.3
SalBow6G4612 Salvia bowleyana HOM05D005655 ORTHO05D007386 2.1e-17 92.4 111 44.1
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 4.6e-17 91.3 116 44.0
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 6.0e-17 90.9 113 45.1
Lsat_1_v5_gn_1_5920 Lactuca sativa HOM05D005655 ORTHO05D007386 7.9e-17 90.5 109 45.0
QL02p036335 Quercus lobata HOM05D005655 ORTHO05D007386 7.9e-17 90.5 114 40.4
SGA_v2.0_scaffold371G50147 Striga asiatica HOM05D005655 ORTHO05D007386 1.0e-16 90.1 104 45.2
DCAR_013167 Daucus carota HOM05D005655 ORTHO05D007386 2.3e-16 89.0 107 43.9
CANSAT25G2324 Cannabis sativa HOM05D005655 ORTHO05D007386 3.0e-16 88.6 121 41.3
ClCG08G007170 Citrullus lanatus HOM05D005655 ORTHO05D007386 3.0e-16 88.6 109 43.1
Lj7C387T6 Lonicera japonica HOM05D005655 ORTHO05D007386 3.0e-16 88.6 111 42.3
RcHm_v2.0_Chr6g0273621 Rosa chinensis HOM05D005655 ORTHO05D007386 3.0e-16 88.6 117 40.2
Sed0016594 Sechium edule HOM05D005655 ORTHO05D007386 3.0e-16 88.6 112 42.0
Rhsim06G0093900 Rhododendron simsii HOM05D005655 ORTHO05D007386 3.9e-16 88.2 113 40.7
vmacro21200 Vaccinium macrocarpon HOM05D005655 ORTHO05D007386 3.9e-16 88.2 111 41.4
FvH4_2g12780 Fragaria vesca HOM05D005655 ORTHO05D007386 8.7e-16 87.0 114 39.5
FAN15G2448 Fragaria x ananassa HOM05D005655 ORTHO05D007386 8.7e-16 87.0 114 39.5
Gohir.D02G067400 Gossypium hirsutum HOM05D005655 ORTHO05D007386 8.7e-16 87.0 114 43.0
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 8.7e-16 87.0 108 45.4
TWI74G0660 Tripterygium wilfordii HOM05D005655 ORTHO05D007386 8.7e-16 87.0 111 44.1
MELO3C019957.2 Cucumis melo HOM05D005655 ORTHO05D007386 1.5e-15 86.3 108 42.6
ECA247G4107 Erigeron canadensis HOM05D005655 ORTHO05D007386 2.5e-15 85.5 107 44.9
Hma1.2p1_0358F.1_g134910 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 3.3e-15 85.1 107 43.0
CSS0031675 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 4.3e-15 84.7 111 42.3
CsaV3_6G004840 Cucumis sativus L. HOM05D005655 ORTHO05D007386 4.3e-15 84.7 111 41.4
Gorai.005G076300 Gossypium raimondii HOM05D005655 ORTHO05D007386 5.6e-15 84.3 114 42.1
TAR625G0054 Trochodendron aralioides HOM05D005655 ORTHO05D007386 5.6e-15 84.3 107 43.0
MSTRG.22119 Avicennia marina HOM05D005655 ORTHO05D007386 7.4e-15 84.0 114 39.5
PGSC0003DMG400031154 Solanum tuberosum HOM05D005655 ORTHO05D007386 7.4e-15 84.0 106 42.5
Eucgr.F02671 Eucalyptus grandis HOM05D005655 ORTHO05D007386 1.3e-14 83.2 113 40.7
PSO170G2558 Papaver somniferum HOM05D005655 ORTHO05D007386 1.6e-14 82.8 110 42.7
Peaxi162Scf00226g00219 Petunia axillaris HOM05D005655 ORTHO05D007386 1.6e-14 82.8 108 41.7
arahy.Tifrunner.gnm1.ann1.N6M4TT Arachis hypogaea HOM05D001194 ORTHO05D005909 2.1e-14 82.4 40 95.0
Migut.N02937 Erythranthe guttata HOM05D005655 ORTHO05D007386 2.1e-14 82.4 104 42.3
Nitab4.5_0001000g0130 Nicotiana tabacum HOM05D005655 ORTHO05D007386 2.8e-14 82.0 108 40.7
PSO210G7095 Papaver somniferum HOM05D005655 ORTHO05D007386 2.8e-14 82.0 107 43.0
Solyc04g072140.4 Solanum lycopersicum HOM05D005655 ORTHO05D007386 2.8e-14 82.0 106 41.5
Sopen04g028310 Solanum pennellii HOM05D005655 ORTHO05D007386 2.8e-14 82.0 106 41.5
CAN.G564.32 Capsicum annuum HOM05D005655 ORTHO05D007386 3.7e-14 81.6 110 39.1
Nitab4.5_0000433g0050 Nicotiana tabacum HOM05D005655 ORTHO05D007386 3.7e-14 81.6 108 40.7
CSS0015534 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 6.2e-14 80.9 111 41.4
AL1G48650 Arabidopsis lyrata HOM05D005655 ORTHO05D007386 1.4e-13 79.7 112 42.0
AT1G34150 Arabidopsis thaliana HOM05D005655 ORTHO05D007386 1.4e-13 79.7 112 42.0
Cc10_g06370 Coffea canephora HOM05D005655 ORTHO05D007386 1.8e-13 79.3 107 41.1
Hund26667 Selenicereus undatus HOM05D005655 ORTHO05D007386 1.8e-13 79.3 117 40.2
Aa31LG6G8320 Aethionema arabicum HOM05D005655 ORTHO05D000003 2.4e-13 79.0 115 38.3
Aqoxy5G02015 Aquilegia oxysepala HOM05D005655 ORTHO05D007386 5.3e-13 77.8 107 41.1
Thhalv10007608m.g Eutrema salsugineum HOM05D005655 ORTHO05D007386 6.9e-13 77.4 119 39.5
AUR62022311 Chenopodium quinoa HOM05D005655 ORTHO05D007386 1.5e-12 76.3 107 41.1
Gohir.A02G061800 Gossypium hirsutum HOM05D005655 ORTHO05D007386 1.5e-12 76.3 104 42.3
Carub.0001s3222 Capsella rubella HOM05D005655 ORTHO05D007386 2.0e-12 75.9 111 38.7
BcaB07g33038 Brassica carinata HOM05D005655 ORTHO05D007386 3.4e-12 75.1 122 38.5
Ah.02g115760 Amaranthus hybridus HOM05D005655 ORTHO05D007386 4.5e-12 74.7 115 37.4
BcaC08g43808 Brassica carinata HOM05D005655 ORTHO05D007386 4.5e-12 74.7 119 39.5
A09p32350 Brassica napus HOM05D005655 ORTHO05D000003 4.5e-12 74.7 119 39.5
C06p11890 Brassica napus HOM05D005655 ORTHO05D000003 4.5e-12 74.7 119 39.5
BolC6t36321H Brassica oleracea HOM05D005655 ORTHO05D000003 4.5e-12 74.7 119 39.5
HanXRQChr04g0115611 Helianthus annuus HOM05D005655 ORTHO05D007386 5.8e-12 74.3 107 39.3
EL10Ac1g01637 Beta vulgaris HOM05D005655 ORTHO05D007386 2.2e-11 72.4 107 39.3
Sp1g29390 Schrenkiella parvula HOM05D005655 ORTHO05D007386 2.2e-11 72.4 119 37.8
Os03g0381100 Oryza sativa ssp. japonica HOM05D005655 ORTHO05D007386 1.9e-10 69.3 104 39.4
THA.LOC104816107 Tarenaya hassleriana HOM05D005655 ORTHO05D007386 2.5e-10 68.9 120 35.8
Lsat_1_v5_gn_1_5940 Lactuca sativa HOM05D005655 ORTHO05D007386 4.2e-10 68.2 39 74.4
Eucgr.J00222 Eucalyptus grandis HOM05D005655 ORTHO05D007386 5.5e-10 67.8 36 77.8
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 9.3e-10 67.0 110 39.1
Glyma.20G171733 Glycine max HOM05D005655 ORTHO05D007386 9.3e-10 67.0 34 88.2
HPP92_027831 Vanilla planifolia HOM05D005655 ORTHO05D007386 1.2e-09 66.6 37 75.7
Eucgr.I00104 Eucalyptus grandis HOM05D005655 ORTHO05D007386 2.1e-09 65.9 36 75.0
MD05G1036800 Malus domestica HOM05D005655 ORTHO05D007386 2.1e-09 65.9 36 77.8
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 2.1e-09 65.9 120 35.0
AUR62034929 Chenopodium quinoa HOM05D005655 ORTHO05D007386 3.5e-09 65.1 36 80.6
Eucgr.L00427 Eucalyptus grandis HOM05D005655 ORTHO05D007386 4.6e-09 64.7 36 72.2
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 6.0e-09 64.3 41 68.3
Mapoly0139s0011 Marchantia polymorpha HOM05D005655 ORTHO05D007386 7.9e-09 63.9 40 52.5
ATR0564G440 Amborella trichopoda HOM05D005655 ORTHO05D007386 1.8e-08 62.8 38 71.1
Thecc.10G182000 Theobroma cacao HOM05D005655 ORTHO05D007386 5.1e-08 61.2 37 73.0
CBR_g31748 Chara braunii HOM05D005655 ORTHO05D007386 6.7e-08 60.8 40 57.5
Pp3c9_3740 Physcomitrium patens HOM05D005655 ORTHO05D007386 8.7e-08 60.5 40 55.0
MD05G1036900 Malus domestica HOM05D005655 ORTHO05D007386 1.5e-07 59.7 34 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1575 Anthoceros agrestis HOM05D005655 ORTHO05D007386 1.3e-06 56.6 35 60.0
SMO174G0185 Selaginella moellendorffii HOM05D005655 ORTHO05D007386 1.6e-06 56.2 32 71.9
Sc13g0008190 Simmondsia chinensis HOM05D005655 ORTHO05D007386 1.6e-06 56.2 36 72.2
SHI09123 Sapria himalayana HOM05D005655 ORTHO05D007386 3.7e-06 55.1 101 37.6
Cre02.g086050 Chlamydomonas reinhardtii HOM05D005655 ORTHO05D007386 8.2e-06 53.9 36 52.8


User provided reference genes

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