Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb424550 Zea mays HOM05D001724 ORTHO05D002973 5.4e-273 943.7 478 100.0
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 3.8e-125 452.6 454 52.9
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 8.1e-120 434.9 478 48.1
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 1.4e-116 424.1 478 47.7
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 4.2e-116 422.5 478 47.9
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 4.3e-113 412.5 465 48.2
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 7.4e-113 411.8 467 47.1
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 1.4e-111 407.5 465 47.7
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 1.4e-111 407.5 469 47.8
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 9.0e-111 404.8 459 46.6
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 1.2e-110 404.4 475 47.6
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 7.6e-110 401.7 458 47.2
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 1.0e-109 401.4 463 47.1
CSS0011372 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 3.8e-109 399.4 460 46.5
FAN21G0081 Fragaria x ananassa HOM05D001724 ORTHO05D002973 6.5e-109 398.7 465 46.5
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 6.5e-109 398.7 465 46.5
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 1.9e-108 397.1 466 47.0
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 2.5e-108 396.7 466 47.0
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 4.2e-108 396.0 464 48.7
Lj1A891G67 Lonicera japonica HOM05D001724 ORTHO05D002973 4.2e-108 396.0 453 48.1
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 5.5e-108 395.6 466 47.2
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 5.5e-108 395.6 513 43.1
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 7.1e-108 395.2 459 46.6
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 1.2e-107 394.4 459 46.8
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 1.2e-107 394.4 465 45.8
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 2.7e-107 393.3 495 44.0
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 2.7e-107 393.3 466 47.0
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 7.9e-107 391.7 476 46.4
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 7.9e-107 391.7 465 45.6
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 1.3e-106 391.0 466 46.8
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 3.0e-106 389.8 465 46.9
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 3.9e-106 389.4 460 47.4
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 5.1e-106 389.0 463 46.7
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 8.7e-106 388.3 461 46.4
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 4.3e-105 386.0 458 46.3
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 5.7e-105 385.6 466 45.3
Sabra16G0241500 Salix brachista HOM05D001724 ORTHO05D002973 7.4e-105 385.2 494 44.5
Glyma.18G076100 Glycine max HOM05D001724 ORTHO05D002973 1.3e-104 384.4 458 47.8
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 1.6e-104 384.0 489 44.0
Glyma.08G330300 Glycine max HOM05D001724 ORTHO05D002973 1.6e-104 384.0 459 47.9
Psat5g167400 Pisum sativum HOM05D001724 ORTHO05D002973 6.3e-104 382.1 459 46.0
ATR0751G261 Amborella trichopoda HOM05D001724 ORTHO05D002973 8.2e-104 381.7 458 45.6
FAN16G1447 Fragaria x ananassa HOM05D001724 ORTHO05D002973 1.1e-103 381.3 451 45.9
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 4.1e-103 379.4 459 45.5
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 1.2e-102 377.9 459 45.8
vmacro11595 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 4.5e-102 375.9 522 42.3
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 1.3e-101 374.4 452 46.5
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 2.2e-101 373.6 455 45.5
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 6.5e-101 372.1 468 44.0
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 8.5e-101 371.7 462 44.4
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 1.4e-100 370.9 471 45.4
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 1.9e-100 370.5 469 45.0
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 4.2e-100 369.4 452 44.7
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 2.1e-99 367.1 452 45.1
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 4.6e-99 365.9 475 43.6
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 1.3e-98 364.4 452 43.8
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 2.3e-98 363.6 463 45.8
AUR62036464 Chenopodium quinoa HOM05D001724 ORTHO05D002973 3.0e-98 363.2 463 42.8
Ah.06g181460 Amaranthus hybridus HOM05D001724 ORTHO05D002973 5.1e-98 362.5 462 43.7
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 1.1e-97 361.3 456 45.8
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 1.1e-97 361.3 424 46.9
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 1.5e-97 360.9 466 43.1
AUR62017111 Chenopodium quinoa HOM05D001724 ORTHO05D002973 4.3e-97 359.4 463 42.5
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 4.3e-97 359.4 484 44.2
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 9.7e-97 358.2 466 44.0
FAN11G2634 Fragaria x ananassa HOM05D001724 ORTHO05D002973 1.3e-96 357.8 469 43.5
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 2.2e-96 357.1 467 44.1
CDE10G0672 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 3.7e-96 356.3 461 43.0
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 6.3e-96 355.5 485 43.5
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 6.3e-96 355.5 479 42.8
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 1.8e-95 354.0 461 44.9
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 2.4e-95 353.6 470 43.2
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 4.1e-95 352.8 471 43.9
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 4.1e-95 352.8 471 43.7
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 4.1e-95 352.8 468 44.7
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 4.1e-95 352.8 452 43.6
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 2.6e-94 350.1 465 43.7
Sc16g0008120 Simmondsia chinensis HOM05D001724 ORTHO05D002973 2.6e-94 350.1 452 44.0
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 1.0e-93 348.2 473 42.5
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 2.2e-93 347.1 479 40.5
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 1.9e-92 344.0 481 42.0
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 5.5e-92 342.4 454 45.4
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 3.9e-90 336.3 465 41.7
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 2.0e-89 334.0 449 43.2
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 5.7e-89 332.4 440 44.3
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 1.7e-88 330.9 460 42.2
Haze_09833 Corylus avellana HOM05D001724 ORTHO05D002973 1.1e-87 328.2 385 48.3
SGA_v2.0_scaffold8G04414 Striga asiatica HOM05D001724 ORTHO05D002973 1.8e-87 327.4 464 40.9
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 2.0e-86 323.9 459 41.8
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 1.7e-85 320.9 460 41.5
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 2.9e-85 320.1 460 41.5
CSS0031157 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 1.2e-78 298.1 390 43.3
CSS0030567 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 4.7e-75 286.2 338 47.3
Cpa.g.sc12.117 Carica papaya HOM05D001724 ORTHO05D002973 6.3e-72 275.8 391 43.0
Oeu049405.1 Olea europaea HOM05D001724 ORTHO05D002973 3.1e-71 273.5 355 43.7
MD03G1026800 Malus domestica HOM05D001724 ORTHO05D002973 2.6e-65 253.8 349 41.5
SHI26518 Sapria himalayana HOM05D000105 ORTHO05D000023 5.0e-61 239.6 343 39.7
unitig_744.g24042 Utricularia gibba HOM05D001724 ORTHO05D002973 5.0e-53 213.0 443 33.2
MBI15_g39785_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 1.5e-44 184.9 373 34.3
SMO266G0093 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.9e-39 167.9 348 31.0
Medtr3g460830 Medicago truncatula HOM05D001724 ORTHO05D002973 5.4e-39 166.4 214 44.9
SMO117G0265 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.3e-37 161.8 495 25.9
Mapoly0076s0056 Marchantia polymorpha HOM05D001724 ORTHO05D002973 2.0e-33 147.9 317 29.7
Hma1.2p1_1094F.1_g256485 Hydrangea macrophylla HOM05D001724 ORTHO05D002973 7.5e-33 146.0 163 46.0
CDE10G0173 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 1.3e-32 145.2 231 35.9
Pp3c6_1870 Physcomitrium patens HOM05D001724 ORTHO05D002973 6.4e-32 142.9 420 25.5
BcaB05g23790 Brassica carinata HOM05D000371 ORTHO05D002973 1.6e-30 138.3 170 44.1
CBR_g84872 Chara braunii HOM05D001724 ORTHO05D002973 2.5e-28 131.0 406 25.4
CsaV3_7G027140 Cucumis sativus L. HOM05D001724 ORTHO05D002973 8.4e-24 115.9 299 29.1
MSTRG.12750 Avicennia marina HOM05D001724 ORTHO05D002973 1.1e-23 115.5 445 28.8
Sed0003315 Sechium edule HOM05D001724 ORTHO05D002973 1.4e-23 115.2 429 26.6
Psat3g151640 Pisum sativum HOM05D001724 ORTHO05D002973 4.6e-22 110.2 338 26.6
Oeu057820.1 Olea europaea HOM05D001724 ORTHO05D002973 1.0e-21 109.0 354 28.5
MELO3C015714.2 Cucumis melo HOM05D001724 ORTHO05D002973 1.3e-21 108.6 317 27.4
Lsat_1_v5_gn_8_97601 Lactuca sativa HOM05D001724 ORTHO05D002973 3.0e-21 107.5 436 25.0
Sopen09g021770 Solanum pennellii HOM05D001724 ORTHO05D002973 2.5e-20 104.4 426 27.2
Cc08_g03940 Coffea canephora HOM05D001724 ORTHO05D002973 3.3e-20 104.0 435 26.7
CiPaw.13G058600 Carya illinoinensis HOM05D001724 ORTHO05D002973 4.3e-20 103.6 358 26.8
ECA236G3973 Erigeron canadensis HOM05D001724 ORTHO05D002973 4.3e-20 103.6 443 25.3
Hma1.2p1_0161F.1_g071460 Hydrangea macrophylla HOM05D001724 ORTHO05D002973 4.3e-20 103.6 419 25.5
QL09p046994 Quercus lobata HOM05D001724 ORTHO05D002973 1.2e-19 102.1 345 26.7
Haze_03569 Corylus avellana HOM05D001724 ORTHO05D002973 1.6e-19 101.7 342 26.6
DCAR_018616 Daucus carota HOM05D001724 ORTHO05D002973 2.1e-19 101.3 442 24.4
Gorai.007G160100 Gossypium raimondii HOM05D001724 ORTHO05D002973 3.6e-19 100.5 428 25.7
SHI26519 Sapria himalayana HOM05D001724 ORTHO05D000023 6.2e-19 99.8 138 41.3
Phvul.008G135000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 8.1e-19 99.4 343 25.9
Actinidia27654 Actinidia chinensis HOM05D001724 ORTHO05D002973 1.1e-18 99.0 344 28.5
Gohir.D11G149300 Gossypium hirsutum HOM05D001724 ORTHO05D002973 1.1e-18 99.0 428 25.9
CANSAT01G3027 Cannabis sativa HOM05D001724 ORTHO05D002973 1.4e-18 98.6 369 26.6
ClCG09G007930 Citrullus lanatus HOM05D001724 ORTHO05D002973 2.4e-18 97.8 299 29.1
Peaxi162Scf00672g00211 Petunia axillaris HOM05D001724 ORTHO05D002973 2.4e-18 97.8 241 31.5
Ca_07444_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 4.0e-18 97.1 314 27.7
arahy.Tifrunner.gnm1.ann1.WJPF93 Arachis hypogaea HOM05D001724 ORTHO05D002973 6.9e-18 96.3 352 24.1
Nitab4.5_0000038g0310 Nicotiana tabacum HOM05D001724 ORTHO05D002973 8.9e-18 95.9 199 32.7
COL.COLO4_36365 Corchorus olitorius HOM05D001724 ORTHO05D002973 1.2e-17 95.5 194 32.5
Solyc09g055920.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 1.5e-17 95.1 191 33.5
TPR.G26836 Trifolium pratense HOM05D001724 ORTHO05D002973 1.5e-17 95.1 278 28.4
Cfa010627 Carpinus fangiana HOM05D001724 ORTHO05D002973 2.6e-17 94.4 214 29.9
Duzib211G0603 Durio zibethinus HOM05D001724 ORTHO05D002973 2.6e-17 94.4 191 31.9
PGSC0003DMG400028884 Solanum tuberosum HOM05D001724 ORTHO05D002973 2.6e-17 94.4 273 28.9
Glyma.08G343300 Glycine max HOM05D001724 ORTHO05D002973 4.4e-17 93.6 349 25.8
Zm00001eb179840 Zea mays HOM05D001724 ORTHO05D002973 4.4e-17 93.6 347 25.6
Ciclev10014999m.g Citrus clementina HOM05D001724 ORTHO05D002973 5.8e-17 93.2 457 22.3
HanXRQChr10g0299661 Helianthus annuus HOM05D001724 ORTHO05D002973 5.8e-17 93.2 426 25.6
Prupe.8G189300 Prunus persica HOM05D001724 ORTHO05D002973 5.8e-17 93.2 189 32.3
Thecc.01G210100 Theobroma cacao HOM05D001724 ORTHO05D002973 9.9e-17 92.4 343 26.5
Lalb_Chr19g0126201 Lupinus albus HOM05D001724 ORTHO05D002973 1.7e-16 91.7 196 29.6
FvH4_2g17670 Fragaria vesca HOM05D001724 ORTHO05D002973 3.8e-16 90.5 303 27.7
FAN24G3199 Fragaria x ananassa HOM05D001724 ORTHO05D002973 3.8e-16 90.5 303 27.7
RcHm_v2.0_Chr6g0282651 Rosa chinensis HOM05D001724 ORTHO05D002973 4.9e-16 90.1 189 30.2
Hund02801 Selenicereus undatus HOM05D001724 ORTHO05D002973 4.9e-16 90.1 215 29.3
EL10Ac5g10599 Beta vulgaris HOM05D001724 ORTHO05D002973 6.4e-16 89.7 426 24.2
Gohir.A11G143000 Gossypium hirsutum HOM05D001724 ORTHO05D002973 8.4e-16 89.4 192 31.8
arahy.Tifrunner.gnm1.ann1.ZLWG22 Arachis hypogaea HOM05D001724 ORTHO05D002973 1.1e-15 89.0 198 29.3
Dinv10447 Davidia involucrata HOM05D001724 ORTHO05D002973 1.9e-15 88.2 207 30.0
Actinidia30008 Actinidia chinensis HOM05D001724 ORTHO05D002973 3.2e-15 87.4 352 27.3
Potri.014G018500 Populus trichocarpa HOM05D001724 ORTHO05D002973 3.2e-15 87.4 479 23.2
Potri.014G177400 Populus trichocarpa HOM05D001724 ORTHO05D002973 4.2e-15 87.0 475 23.2
SGA_v2.0_scaffold77G25302 Striga asiatica HOM05D001724 ORTHO05D002973 4.2e-15 87.0 390 23.8
VMungo1383G0073 Vigna mungo HOM05D001724 ORTHO05D002973 4.2e-15 87.0 203 28.1
Manes.13G055100 Manihot esculenta HOM05D001724 ORTHO05D002973 7.1e-15 86.3 213 28.2
Migut.N00669 Erythranthe guttata HOM05D001724 ORTHO05D002973 9.3e-15 85.9 191 31.4
PSO675G8141 Papaver somniferum HOM05D001724 ORTHO05D002973 1.2e-14 85.5 222 29.7
Nn1g09819 Nelumbo nucifera HOM05D001724 ORTHO05D002973 2.1e-14 84.7 193 29.0
MBI07_g08152_MAGBIO Magnolia biondii HOM05D001724 ORTHO05D002973 2.7e-14 84.3 216 27.8
PSO017G2441 Papaver somniferum HOM05D001724 ORTHO05D002973 6.0e-14 83.2 199 29.1
Aqoxy2G04088 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 1.3e-13 82.0 192 30.7
Sabra14G0135700 Salix brachista HOM05D001724 ORTHO05D002973 1.3e-13 82.0 465 23.2
TAR633G0525 Trochodendron aralioides HOM05D001724 ORTHO05D002973 3.0e-13 80.9 197 27.9
Atru.chr6.3539 Acer truncatum HOM05D001724 ORTHO05D002973 8.7e-13 79.3 190 26.8
Lj1g0019212 Lotus japonicus HOM05D001724 ORTHO05D002973 8.7e-13 79.3 398 24.4
THA.LOC104808814 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 8.7e-13 79.3 344 23.0
BcaC08g44223 Brassica carinata HOM05D001724 ORTHO05D002973 1.1e-12 79.0 213 31.9
TWI18G1201 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 1.5e-12 78.6 138 33.3
Lj2C1115T12 Lonicera japonica HOM05D001724 ORTHO05D002973 3.3e-12 77.4 303 24.1
CDE05G0201 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 4.3e-12 77.0 126 35.7
Nitab4.5_0002518g0030 Nicotiana tabacum HOM05D001724 ORTHO05D002973 4.3e-12 77.0 162 34.0
Hma1.2p1_0161F.1_g071470 Hydrangea macrophylla HOM05D001724 ORTHO05D002973 7.3e-12 76.3 296 26.4
FvH4_3g43120 Fragaria vesca HOM05D001724 ORTHO05D002973 3.6e-11 73.9 115 35.7
PGSC0003DMG400041007 Solanum tuberosum HOM05D001724 ORTHO05D002973 2.4e-10 71.2 110 42.7
Sp3g22970 Schrenkiella parvula HOM05D001724 ORTHO05D002973 4.0e-10 70.5 269 24.2
SHI10232 Sapria himalayana HOM05D001724 ORTHO05D002973 6.9e-10 69.7 229 24.5
MELO3C027004.2 Cucumis melo HOM05D001724 ORTHO05D002973 5.4e-07 60.1 165 27.9


User provided reference genes

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