Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 0.0e+00 1087.8 565 100.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.1e-292 1008.4 565 91.3
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.2e-267 924.1 566 81.4
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.6e-266 921.8 566 81.4
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 2.9e-265 918.3 566 81.6
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 8.3e-265 916.8 566 81.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 8.3e-265 916.8 566 80.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.4e-264 915.2 566 81.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 3.2e-264 914.8 566 80.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.2e-263 912.9 566 79.9
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.5e-263 911.4 565 81.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.0e-263 910.6 566 79.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 3.0e-262 908.3 566 80.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 3.0e-262 908.3 566 81.3
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.9e-262 907.9 566 80.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 8.6e-262 906.7 566 80.4
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 8.6e-262 906.7 566 80.4
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.9e-261 905.6 566 79.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.9e-261 905.6 566 79.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.9e-261 905.6 566 79.7
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 2.5e-261 905.2 566 80.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.3e-261 904.8 566 80.4
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 4.3e-261 904.4 566 80.6
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 5.6e-261 904.0 566 79.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 9.5e-261 903.3 566 79.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 9.5e-261 903.3 566 79.9
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 2.8e-260 901.7 566 78.6
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.8e-260 901.7 566 79.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 3.6e-260 901.4 566 80.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.7e-260 901.0 566 79.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 4.0e-259 897.9 567 79.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.2e-259 897.5 572 79.2
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 5.2e-259 897.5 567 79.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 6.8e-259 897.1 566 79.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.8e-259 897.1 569 79.1
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 8.9e-259 896.7 566 79.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.2e-258 896.3 566 79.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.5e-258 896.0 570 79.6
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.5e-258 896.0 566 78.6
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 2.0e-258 895.6 566 79.2
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 2.0e-258 895.6 566 78.6
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 3.4e-258 894.8 566 79.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.4e-258 894.8 566 78.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 4.4e-258 894.4 566 78.4
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 4.4e-258 894.4 566 78.4
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 4.4e-258 894.4 566 78.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 4.4e-258 894.4 565 79.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 7.6e-258 893.6 566 78.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 7.6e-258 893.6 566 79.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 7.6e-258 893.6 566 79.2
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 9.9e-258 893.3 566 79.5
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 9.9e-258 893.3 566 78.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.3e-257 892.9 566 78.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.7e-257 892.5 566 79.0
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.7e-257 892.5 566 78.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.9e-257 891.7 566 78.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 2.9e-257 891.7 566 78.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 4.9e-257 891.0 566 78.6
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 8.4e-257 890.2 566 79.2
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 4.1e-256 887.9 583 77.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 2.7e-255 885.2 566 78.3
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 2.7e-255 885.2 566 77.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 7.8e-255 883.6 566 78.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 7.8e-255 883.6 566 78.1
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.0e-254 883.2 570 78.6
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.0e-254 883.2 592 76.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 1.3e-254 882.9 566 77.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 3.9e-254 881.3 566 78.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 2.5e-253 878.6 566 77.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.5e-253 878.6 566 76.5
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 5.6e-253 877.5 566 76.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 9.6e-253 876.7 566 76.5
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 9.6e-253 876.7 566 76.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 9.6e-253 876.7 566 76.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 9.6e-253 876.7 584 76.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-252 876.3 566 76.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.2e-252 876.3 566 76.3
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.6e-252 875.9 566 77.2
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.1e-252 875.5 566 77.2
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.8e-252 875.2 566 76.1
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.6e-252 874.8 566 76.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 3.6e-252 874.8 567 78.3
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.4e-251 872.8 567 76.9
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 6.8e-251 870.5 568 75.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 8.9e-251 870.2 568 75.7
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 5.8e-250 867.5 566 77.2
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 6.4e-249 864.0 566 75.6
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.2e-248 861.7 567 75.5
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 4.2e-248 861.3 566 75.8
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 2.1e-247 859.0 566 76.7
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-246 856.3 606 72.1
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.1e-245 853.2 566 76.0
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.5e-245 852.8 612 71.6
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.3e-245 851.3 612 71.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.8e-244 848.6 569 76.4
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 8.1e-244 847.0 540 78.1
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.4e-242 841.6 553 75.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 4.4e-242 841.3 641 68.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.4e-240 836.3 599 70.8
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.1e-240 833.9 578 74.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.6e-239 832.8 567 73.5
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.9e-238 828.2 590 72.0
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.5e-237 826.2 566 73.1
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 7.9e-231 803.9 587 70.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.1e-229 800.0 592 67.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.1e-228 795.8 547 74.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.5e-223 778.5 570 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.5e-223 778.5 570 67.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.1e-216 756.9 570 65.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 5.5e-216 754.6 570 65.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 7.4e-213 744.2 569 65.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.1e-211 738.8 490 74.9
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 2.2e-188 662.9 573 62.7
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.8e-187 659.8 424 78.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.6e-183 645.6 565 56.1
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.3e-180 637.1 375 83.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 7.0e-179 631.3 564 54.8
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.5e-168 594.3 358 82.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.0e-142 509.2 329 74.2
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.6e-133 478.4 302 79.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 6.4e-124 448.7 612 42.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.0e-121 439.9 280 77.5
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.8e-118 430.6 272 79.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 6.2e-111 405.6 269 76.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 4.2e-107 392.9 655 35.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-102 376.3 252 74.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.6e-101 372.1 233 76.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-98 363.2 237 75.9
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 6.3e-95 352.4 628 35.0
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.5e-83 312.8 182 82.4
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 9.1e-78 295.4 247 59.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.0e-65 253.4 195 67.7
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.6e-64 250.8 147 80.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.6e-64 250.8 215 60.5
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.3e-60 238.4 167 73.7
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.2e-59 232.6 140 83.6
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-57 228.0 155 64.5
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.3e-51 206.8 156 66.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.7e-47 194.9 471 30.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.7e-47 193.7 167 62.9
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.0e-46 189.5 166 62.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.2e-46 189.1 117 79.5
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.0e-36 156.8 111 67.6
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.1e-34 151.4 100 76.0
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.0e-32 144.8 89 82.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.5e-27 128.6 119 58.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.7e-26 123.6 61 98.4
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-25 121.3 100 64.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.2e-24 119.0 62 93.5
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.4e-24 117.5 60 95.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.3e-23 115.5 100 62.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.3e-23 115.5 100 62.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.9e-23 113.6 80 68.8
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.3e-19 100.9 93 62.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-18 99.0 69 63.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.6e-18 97.4 57 84.2
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.2e-15 88.2 65 67.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.0e-12 77.8 101 44.6
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.3e-10 72.4 43 67.4
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.1e-09 67.8 38 81.6
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 4.0e-09 67.4 40 75.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.9e-06 58.5 63 55.6


User provided reference genes

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