Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 6.7e-202 707.2 376 100.0
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 3.7e-168 595.1 377 82.5
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.7e-120 435.6 378 62.2
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 7.8e-118 427.9 378 61.9
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 2.3e-117 426.4 378 61.4
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.9e-116 423.3 367 60.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 4.3e-116 422.2 378 61.9
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 5.6e-116 421.8 379 61.7
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 9.6e-116 421.0 394 59.1
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.8e-115 419.5 363 61.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 3.6e-115 419.1 367 60.2
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 6.2e-115 418.3 378 60.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 8.1e-115 417.9 367 60.5
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.8e-114 416.8 378 61.1
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 2.4e-114 416.4 378 60.3
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 4.0e-114 415.6 383 60.6
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 6.8e-114 414.8 378 58.5
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.5e-113 413.7 367 60.5
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.0e-113 413.3 366 59.6
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 5.8e-113 411.8 365 59.5
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 5.8e-113 411.8 368 60.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 7.6e-113 411.4 356 59.8
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.2e-112 409.8 378 59.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 2.9e-112 409.5 378 58.7
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.9e-112 409.5 366 58.7
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 4.9e-112 408.7 368 59.0
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 4.9e-112 408.7 378 59.0
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 6.4e-112 408.3 367 59.1
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 6.4e-112 408.3 368 60.3
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 6.4e-112 408.3 365 60.5
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 6.4e-112 408.3 378 59.5
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 8.4e-112 407.9 367 59.4
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 8.4e-112 407.9 367 59.1
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.4e-111 407.1 367 60.2
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.9e-111 406.8 378 58.7
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.4e-111 406.4 367 58.9
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 2.4e-111 406.4 378 58.5
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.2e-111 406.0 368 58.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.2e-110 404.1 366 58.2
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 2.7e-110 402.9 367 58.3
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.7e-110 402.9 366 58.5
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 3.5e-110 402.5 371 57.7
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 4.6e-110 402.1 367 58.3
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 4.6e-110 402.1 361 58.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 6.0e-110 401.7 367 58.0
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.0e-109 401.0 356 59.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 1.3e-109 400.6 390 55.9
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.3e-109 399.8 367 59.4
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.0e-109 399.4 378 58.7
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 5.1e-109 398.7 382 57.6
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 5.1e-109 398.7 368 58.4
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.7e-109 397.9 328 63.7
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.5e-108 397.1 378 59.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.5e-108 397.1 367 56.9
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.3e-108 395.6 340 59.1
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.6e-108 395.2 370 58.1
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.3e-108 394.8 378 58.5
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 7.3e-108 394.8 367 56.9
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.6e-107 393.7 368 59.5
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.8e-107 392.9 354 58.8
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 3.6e-107 392.5 367 56.4
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.1e-106 391.0 367 56.4
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-105 387.5 378 57.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-105 387.5 378 57.9
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.4e-105 386.0 378 57.9
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 5.8e-105 385.2 367 56.7
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 9.9e-105 384.4 368 57.1
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.8e-104 382.5 367 56.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.9e-104 382.1 316 61.4
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.4e-103 380.6 376 56.9
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.2e-103 379.4 356 55.9
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.1e-102 376.7 356 55.6
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.3e-101 374.0 397 53.4
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.7e-101 373.6 366 54.9
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.5e-100 369.8 368 55.7
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.1e-98 364.4 365 56.7
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.4e-98 364.0 378 56.1
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.4e-98 364.0 370 56.8
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 9.0e-98 361.3 365 56.4
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.0e-97 360.1 347 55.9
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 3.4e-97 359.4 367 56.4
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 4.5e-97 359.0 378 50.5
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 3.8e-96 355.9 367 55.3
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 3.8e-96 355.9 368 54.1
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 6.4e-96 355.1 367 56.1
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 2.4e-95 353.2 378 54.5
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.4e-95 353.2 367 55.6
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.1e-94 350.1 366 53.6
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 2.7e-94 349.7 380 53.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 2.7e-94 349.7 379 54.6
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 3.5e-94 349.4 379 54.4
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.3e-93 347.4 379 54.4
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.8e-93 347.1 379 54.9
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.8e-93 347.1 378 52.4
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.9e-92 343.6 340 54.1
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.1e-91 340.1 378 54.5
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.2e-91 338.6 404 50.7
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.5e-89 334.0 367 52.9
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 8.4e-88 328.2 315 54.3
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 4.2e-87 325.9 305 55.7
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.7e-85 318.2 355 49.3
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 7.4e-84 315.1 367 51.0
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 7.4e-84 315.1 244 67.2
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.8e-83 313.2 291 57.0
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.8e-82 310.5 367 51.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 7.2e-79 298.5 367 49.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 6.1e-78 295.4 389 42.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 8.7e-77 291.6 404 44.1
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.9e-71 273.9 411 40.6
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.4e-68 261.9 385 46.0
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.1e-58 229.6 280 48.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.5e-55 221.1 224 49.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 6.1e-54 215.7 167 66.5
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.0e-53 214.9 173 64.7
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.6e-49 201.1 322 41.6
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.9e-48 196.8 168 63.7
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.5e-44 184.5 206 51.0
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.6e-41 174.5 358 36.9
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.5e-41 173.3 201 47.8
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.7e-41 172.2 116 75.0
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 2.2e-40 170.6 216 46.3
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-39 167.5 116 73.3
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 4.2e-39 166.4 259 39.4
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 6.1e-38 162.5 117 67.5
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.0e-37 159.8 131 64.9
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 5.9e-33 146.0 166 51.8
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.3e-32 144.8 164 50.6
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.1e-30 136.0 116 63.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.9e-27 126.3 141 51.1
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.8e-26 124.4 84 70.2
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.0e-25 120.9 119 53.8
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.7e-25 120.6 183 38.8
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 5.9e-25 119.4 203 37.9
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.2e-22 111.7 72 72.2
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.8e-21 107.8 77 64.9
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 4.0e-21 106.7 146 45.2
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.2e-21 106.3 78 73.1
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 9.2e-18 95.5 133 38.3
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 6.0e-17 92.8 105 46.7
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 1.9e-15 87.8 410 22.9
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 6.8e-13 79.3 401 24.4


User provided reference genes

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