Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382550 Zea mays HOM05D001670 ORTHO05D002980 1.6e-65 252.7 132 100.0
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.3e-64 249.6 132 98.5
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 3.9e-64 248.1 132 97.7
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 2.4e-61 238.8 132 93.2
Zm00001eb235140 Zea mays HOM05D001670 ORTHO05D002980 2.8e-54 215.3 117 96.6
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.6e-41 172.9 132 69.7
Os03g0102333 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 2.2e-35 152.5 129 62.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.9e-34 149.4 132 57.6
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.1e-31 140.2 130 52.3
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 3.3e-31 138.7 129 54.3
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 3.3e-31 138.7 120 59.2
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 4.3e-31 138.3 120 59.2
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 2.2e-30 136.0 129 51.9
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.8e-30 135.6 131 50.4
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 2.8e-30 135.6 131 51.1
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 3.7e-30 135.2 129 52.7
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 4.8e-30 134.8 129 51.9
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 6.3e-30 134.4 120 54.2
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 6.3e-30 134.4 130 52.3
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 6.3e-30 134.4 130 52.3
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.3e-30 134.4 125 52.8
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.3e-30 134.4 125 52.8
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 8.2e-30 134.0 131 51.9
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 8.2e-30 134.0 125 53.6
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.2e-30 134.0 130 51.5
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.4e-29 133.3 120 53.3
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.4e-29 133.3 120 53.3
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.4e-29 133.3 120 53.3
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.4e-29 133.3 120 54.2
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.8e-29 132.9 129 51.9
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.8e-29 132.9 130 51.5
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.8e-29 132.9 130 50.8
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.4e-29 132.5 129 51.2
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.4e-29 132.5 130 49.2
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.4e-29 132.5 130 49.2
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 4.1e-29 131.7 131 51.1
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 5.3e-29 131.3 120 53.3
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 5.3e-29 131.3 120 52.5
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 5.3e-29 131.3 129 50.4
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 6.9e-29 131.0 129 51.9
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 6.9e-29 131.0 120 52.5
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 6.9e-29 131.0 129 51.2
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 6.9e-29 131.0 129 51.2
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 6.9e-29 131.0 129 51.2
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 6.9e-29 131.0 120 54.2
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 6.9e-29 131.0 131 51.9
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 9.1e-29 130.6 129 49.6
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 9.1e-29 130.6 120 52.5
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 9.1e-29 130.6 120 53.3
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.2e-28 130.2 131 51.1
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.2e-28 130.2 120 53.3
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.2e-28 130.2 130 52.3
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.2e-28 130.2 129 50.4
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.2e-28 130.2 129 50.4
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 1.5e-28 129.8 131 49.6
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 2.0e-28 129.4 129 51.9
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.0e-28 129.4 129 48.8
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 2.6e-28 129.0 120 55.0
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.6e-28 129.0 131 50.4
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 3.4e-28 128.6 129 50.4
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 3.4e-28 128.6 125 51.2
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 3.4e-28 128.6 129 49.6
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 4.5e-28 128.3 135 48.9
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 4.5e-28 128.3 129 49.6
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 4.5e-28 128.3 129 49.6
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 4.5e-28 128.3 129 49.6
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 4.5e-28 128.3 129 49.6
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 4.5e-28 128.3 120 55.8
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 4.5e-28 128.3 129 49.6
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 4.5e-28 128.3 129 50.4
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 4.5e-28 128.3 131 51.9
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.5e-28 128.3 120 52.5
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 48.9
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 48.9
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 50.4
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 50.4
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 50.4
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 51.1
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 51.1
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 51.1
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 51.1
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.9e-28 127.9 131 51.1
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 7.7e-28 127.5 131 50.4
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 7.7e-28 127.5 120 51.7
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 7.7e-28 127.5 120 50.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 7.7e-28 127.5 131 49.6
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 1.0e-27 127.1 131 48.1
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-27 127.1 131 51.1
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-27 127.1 131 51.1
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.0e-27 127.1 131 50.4
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.3e-27 126.7 130 49.2
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.3e-27 126.7 131 49.6
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.3e-27 126.7 120 50.0
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.3e-27 126.7 130 50.0
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.3e-27 126.7 120 54.2
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.7e-27 126.3 130 50.0
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 2.2e-27 125.9 131 48.9
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.2e-27 125.9 120 50.0
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.2e-27 125.9 120 52.5
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 2.2e-27 125.9 130 51.5
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 2.2e-27 125.9 129 50.4
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 2.9e-27 125.6 131 48.1
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 2.9e-27 125.6 119 54.6
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 2.9e-27 125.6 120 50.8
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.9e-27 125.6 120 55.0
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 2.9e-27 125.6 131 49.6
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 5.0e-27 124.8 130 50.0
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.5e-27 124.4 130 50.0
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 1.1e-26 123.6 131 48.1
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.1e-26 123.6 120 50.0
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 1.1e-26 123.6 131 45.0
A04p24880 Brassica napus HOM05D001670 ORTHO05D002980 1.4e-26 123.2 131 48.1
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.9e-26 122.9 131 47.3
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.9e-26 122.9 120 51.7
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.9e-26 122.9 120 51.7
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 3.2e-26 122.1 131 47.3
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 3.2e-26 122.1 131 47.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 3.2e-26 122.1 131 47.3
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 3.2e-26 122.1 131 47.3
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 3.2e-26 122.1 122 50.8
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 3.2e-26 122.1 120 50.0
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 4.2e-26 121.7 122 51.6
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 4.2e-26 121.7 121 51.2
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 4.2e-26 121.7 120 50.0
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 4.2e-26 121.7 120 48.3
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 4.2e-26 121.7 129 48.8
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 5.5e-26 121.3 130 49.2
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 7.2e-26 120.9 131 48.1
C04p61850 Brassica napus HOM05D001670 ORTHO05D002980 7.2e-26 120.9 131 46.6
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 7.2e-26 120.9 131 48.1
BolC4t27667H Brassica oleracea HOM05D001670 ORTHO05D002980 7.2e-26 120.9 131 46.6
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 7.2e-26 120.9 131 48.1
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 7.2e-26 120.9 120 50.0
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 9.4e-26 120.6 131 47.3
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 9.4e-26 120.6 131 47.3
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 9.4e-26 120.6 131 46.6
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 9.4e-26 120.6 131 51.1
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 9.4e-26 120.6 120 50.8
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.6e-25 119.8 110 57.3
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.1e-25 119.4 122 50.8
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.1e-25 119.4 120 49.2
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.7e-25 119.0 131 47.3
BcaC02g07928 Brassica carinata HOM05D001670 ORTHO05D002980 3.6e-25 118.6 122 47.5
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 4.7e-25 118.2 120 50.0
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 4.7e-25 118.2 133 48.1
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 7.9e-25 117.5 130 46.9
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 7.9e-25 117.5 130 46.9
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 2.3e-24 115.9 129 47.3
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 2.3e-24 115.9 119 52.1
BcaB06g28670 Brassica carinata HOM05D001670 ORTHO05D002980 2.3e-24 115.9 120 48.3
Haze_02722 Corylus avellana HOM05D001670 ORTHO05D002980 3.0e-24 115.5 131 48.1
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 8.8e-24 114.0 120 47.5
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 2.6e-23 112.5 116 52.6
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 3.3e-23 112.1 120 47.5
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 2.8e-22 109.0 127 44.1
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 1.8e-21 106.3 120 44.2
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.4e-21 105.9 131 41.2
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.1e-21 105.5 131 44.3
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 9.1e-21 104.0 121 47.9
Zm00001eb134440 Zea mays HOM05D001670 ORTHO05D002980 1.5e-20 103.2 52 100.0
Zm00001eb208300 Zea mays HOM05D001670 ORTHO05D002980 1.5e-20 103.2 52 100.0
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 2.0e-20 102.8 119 46.2
Zm00001eb308110 Zea mays HOM05D001670 ORTHO05D002980 1.7e-19 99.8 52 96.2
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.9e-19 99.0 107 47.7
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 6.1e-17 91.3 114 43.0
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.5e-15 86.7 107 41.1
Zm00001eb283330 Zea mays HOM05D001670 ORTHO05D002980 8.2e-14 80.9 54 77.8
ECA234G2815 Erigeron canadensis HOM05D001670 ORTHO05D002980 3.1e-13 79.0 104 38.5
HanXRQChr16g0519701 Helianthus annuus HOM05D001670 ORTHO05D002980 3.5e-12 75.5 104 39.4
Zm00001eb131810 Zea mays HOM05D001670 ORTHO05D002980 2.2e-11 72.8 36 97.2
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 7.2e-10 67.8 110 38.2
Zm00001eb106330 Zea mays HOM05D001670 ORTHO05D002980 2.7e-09 65.9 32 96.9
Actinidia00125 Actinidia chinensis HOM05D001670 ORTHO05D002980 3.6e-09 65.5 66 48.5
Zm00001eb118550 Zea mays HOM05D001670 ORTHO05D002980 8.0e-09 64.3 32 96.9
MD07G1112600 Malus domestica HOM05D001670 ORTHO05D002980 4.4e-07 58.5 62 43.5
Zm00001eb093240 Zea mays HOM05D013194 ORTHO05D015061 7.5e-07 57.8 41 73.2
Zm00001eb202170 Zea mays HOM05D004181 ORTHO05D005610 7.5e-07 57.8 41 73.2
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 7.5e-07 57.8 41 73.2
Zm00001eb237010 Zea mays HOM05D001670 ORTHO05D005610 7.5e-07 57.8 41 73.2
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 3.7e-06 55.5 60 45.0


User provided reference genes

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