Gene: PGR042G0136
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR042G0136
- Transcript Identifier PGR042G0136.01
- Gene Type Coding gene
- Location NC_045130.1 : 11231802-11252180 : positive
Gene Family Information
- ID HOM05D001670
- #Genes/#Species 387/99
- Phylogenetic origin
- ID ORTHO05D002980
- #Genes/#Species 251/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031390314.1
- name LOC116202829
- name XM_031534454.1
- id gene-LOC116202829
- uniprot A0A6P8D745
Descriptions
- product CCR4-NOT transcription complex subunit 1, transcript variant X3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006417 | IEA | GOA Database | regulation of translation | |
| GO:0006417 | IEA | InterPro | regulation of translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G02080 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030015 | IEA | GOA Database | CCR4-NOT core complex | |
| GO:0030015 | IEA | InterPro | CCR4-NOT core complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G02080 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR024557 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
| IPR032191 | CCR4-NOT transcription complex subunit 1, CAF1-binding domain |
| IPR038535 | CCR4-NOT subunit 1, TTP binding domain superfamily |
| IPR016021 | MIF4G-like domain superfamily |
| IPR032194 | CCR4-NOT transcription complex subunit 1, HEAT repeat |
| IPR032193 | CCR4-NOT transcription complex subunit 1, TTP binding domain |
| IPR040398 | CCR4-NOT transcription complex subunit 1 |
| IPR007196 | CCR4-Not complex component, Not1, C-terminal |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.3 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.scaffold component NOT1 |