Gene: Carub.0001s0015
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s0015
- Transcript Identifier Carub.0001s0015.1
- Gene Type Coding gene
- Location scaffold_1 : 41321-54507 : negative
Gene Family Information
- ID HOM05D001670
- #Genes/#Species 387/99
- Phylogenetic origin
- ID ORTHO05D002980
- #Genes/#Species 251/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0001s0015.v1.1
- pacid 39230663
- synonym Carubv10012145m.g
Descriptions
- Description K12604 - CCR4-NOT transcription complex subunit 1 (CNOT1, NOT1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006417 | IEA | InterPro | regulation of translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G02080 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030015 | IEA | InterPro | CCR4-NOT core complex | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G02080 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR032191 | CCR4-NOT transcription complex subunit 1, CAF1-binding domain |
| IPR032194 | CCR4-NOT transcription complex subunit 1, HEAT repeat |
| IPR038535 | CCR4-NOT subunit 1, TTP binding domain superfamily |
| IPR016021 | MIF4G-like domain superfamily |
| IPR032193 | CCR4-NOT transcription complex subunit 1, TTP binding domain |
| IPR024557 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
| IPR007196 | CCR4-Not complex component, Not1, C-terminal |
| IPR040398 | CCR4-NOT transcription complex subunit 1 |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.3 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.scaffold component NOT1 |