Gene: AT1G02080
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G02080
- Transcript Identifier AT1G02080.1
- Gene Type Coding gene
- Location Chr1 : 373335-386682 : positive
Gene Family Information
- ID HOM05D001670
- #Genes/#Species 387/99
- Phylogenetic origin
- ID ORTHO05D002980
- #Genes/#Species 251/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G02080.1
- uniprot F4HVV6
Descriptions
- Description transcription regulator
- Computational description transcription regulators; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006417 | IEA | Gene Ontology | regulation of translation | |
| GO:0006417 | IEA | InterPro | regulation of translation | |
| GO:0000288 | IBA | Gene Ontology | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
| GO:0060090 | IBA | Gene Ontology | molecular adaptor activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030015 | IBA IEA | Gene Ontology | CCR4-NOT core complex | 1 |
| GO:0030015 | IEA | InterPro | CCR4-NOT core complex | |
| GO:0005576 | HDA | Gene Ontology | extracellular region | 3 |
| GO:0000932 | IBA | Gene Ontology | P-body | 1 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007196 | CCR4-Not complex component, Not1, C-terminal |
| IPR016021 | MIF4G-like domain superfamily |
| IPR032191 | CCR4-NOT transcription complex subunit 1, CAF1-binding domain |
| IPR032193 | CCR4-NOT transcription complex subunit 1, TTP binding domain |
| IPR040398 | CCR4-NOT transcription complex subunit 1 |
| IPR032194 | CCR4-NOT transcription complex subunit 1, HEAT repeat |
| IPR024557 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
| IPR038535 | CCR4-NOT subunit 1, TTP binding domain superfamily |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.3 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.scaffold component NOT1 |