Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 8.1e-223 776.9 442 100.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 4.9e-127 458.8 500 60.8
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.8e-121 440.3 472 59.1
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.9e-67 260.8 459 42.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 3.3e-67 260.0 453 42.8
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 2.8e-66 256.9 453 43.0
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 8.2e-66 255.4 458 45.6
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.4e-65 254.6 475 43.8
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.0e-63 248.4 455 42.9
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 2.9e-63 246.9 451 47.0
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.8e-63 246.5 461 41.4
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 8.4e-63 245.4 478 40.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.4e-62 244.6 462 41.8
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.5e-62 243.8 459 41.6
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 4.2e-62 243.0 463 43.6
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 4.2e-62 243.0 463 43.6
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 7.1e-62 242.3 474 39.9
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.6e-61 241.1 453 45.5
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 2.7e-61 240.4 462 44.2
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.7e-61 240.4 458 42.6
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.0e-60 238.4 450 40.7
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.0e-60 236.9 465 43.4
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 3.9e-60 236.5 245 59.2
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 5.1e-60 236.1 451 46.3
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.1e-59 235.0 452 44.9
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.5e-59 234.6 452 45.6
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.9e-59 234.2 454 44.9
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.3e-59 233.0 449 44.1
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 5.7e-59 232.6 476 40.5
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 7.4e-59 232.3 455 44.4
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.6e-58 231.1 442 45.0
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.6e-58 231.1 485 43.3
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.6e-58 231.1 466 40.1
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.6e-58 231.1 461 39.7
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.6e-58 231.1 452 44.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.8e-58 230.3 240 57.9
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 3.7e-58 229.9 459 45.8
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 3.7e-58 229.9 495 41.6
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 4.8e-58 229.6 452 42.3
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 6.3e-58 229.2 449 42.5
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.3e-58 229.2 438 42.0
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.3e-58 229.2 502 42.6
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.2e-58 228.8 451 40.8
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 8.2e-58 228.8 454 43.2
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.1e-57 228.4 448 44.4
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.4e-57 227.3 493 41.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.4e-57 227.3 449 40.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.1e-57 226.9 461 41.6
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 5.3e-57 226.1 485 42.1
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.2e-56 224.9 457 45.7
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.5e-56 224.6 466 44.0
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.5e-56 224.6 459 40.5
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.5e-56 224.6 463 44.5
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.5e-56 224.6 446 42.6
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.6e-56 223.8 457 42.0
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.6e-56 223.8 455 42.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.4e-56 223.4 464 44.0
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 3.4e-56 223.4 438 39.7
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.5e-56 223.0 447 41.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.3e-55 221.5 513 37.6
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.7e-55 221.1 473 39.5
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.7e-55 221.1 473 42.9
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.8e-55 219.9 498 41.0
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 3.8e-55 219.9 445 39.3
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 3.8e-55 219.9 460 43.7
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.1e-54 218.4 459 39.4
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.1e-54 218.4 455 41.3
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.4e-54 218.0 463 38.2
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.5e-54 217.2 459 44.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 5.5e-54 216.1 472 38.6
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 7.2e-54 215.7 444 43.9
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 9.4e-54 215.3 468 38.7
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.4e-54 215.3 465 43.9
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 9.4e-54 215.3 465 44.3
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.2e-53 214.9 479 40.9
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.6e-53 214.5 456 41.7
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.7e-53 213.8 462 38.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 3.6e-53 213.4 463 39.1
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 4.6e-53 213.0 468 38.9
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 6.1e-53 212.6 462 40.3
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 6.1e-53 212.6 466 42.3
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 7.9e-53 212.2 461 39.5
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.4e-52 211.5 237 55.7
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.4e-52 211.5 447 40.5
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.8e-52 211.1 464 38.4
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.8e-52 211.1 542 36.7
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 3.9e-52 209.9 449 42.8
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.1e-52 209.5 476 38.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 8.8e-52 208.8 479 39.0
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.1e-51 208.4 479 43.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.5e-51 208.0 459 39.7
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 2.0e-51 207.6 441 39.0
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 2.5e-51 207.2 464 41.8
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.5e-51 207.2 469 38.6
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 3.3e-51 206.8 452 41.2
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 4.3e-51 206.5 509 36.3
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 2.2e-50 204.1 450 39.1
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.2e-50 204.1 413 41.2
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.7e-50 203.4 475 36.4
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-50 203.4 463 38.7
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 3.7e-50 203.4 463 38.7
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 3.7e-50 203.4 463 38.7
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 3.7e-50 203.4 470 43.6
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 4.8e-50 203.0 450 38.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.8e-50 203.0 474 43.2
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 6.3e-50 202.6 452 42.0
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.3e-50 202.6 460 41.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 8.2e-50 202.2 450 39.6
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.4e-49 201.4 461 38.6
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.8e-49 201.1 452 41.4
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 4.1e-49 199.9 462 39.6
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 6.9e-49 199.1 481 39.1
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.9e-49 199.1 446 38.6
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 9.1e-49 198.7 458 43.2
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.5e-48 198.0 450 39.1
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.5e-48 198.0 485 39.0
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-48 197.6 446 39.5
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 2.0e-48 197.6 445 39.3
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 7.7e-48 195.7 486 36.4
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.5e-47 192.2 460 42.6
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 8.5e-47 192.2 467 35.5
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.1e-46 191.8 487 40.2
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.5e-46 190.7 456 37.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 5.5e-46 189.5 441 43.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 7.2e-46 189.1 480 36.9
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.6e-45 188.0 459 37.7
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.7e-45 187.2 453 39.7
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.7e-45 186.4 454 38.3
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 6.1e-45 186.0 440 40.7
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.4e-44 184.9 466 38.4
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.8e-44 184.5 502 35.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.8e-44 184.5 452 39.4
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.9e-44 183.3 459 35.7
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.5e-43 181.4 448 36.6
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-43 181.4 448 36.6
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.3e-43 180.3 450 40.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 4.4e-43 179.9 453 39.1
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 4.4e-43 179.9 448 36.4
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 5.7e-43 179.5 449 38.1
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.3e-42 178.3 451 37.0
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.2e-42 177.6 486 37.2
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.1e-41 175.3 440 33.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 5.3e-41 172.9 458 40.2
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 2.6e-40 170.6 472 39.2
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.7e-39 167.9 502 36.3
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 6.5e-39 166.0 190 54.7
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 8.5e-39 165.6 481 36.0
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.9e-38 164.5 355 40.6
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 3.0e-36 157.1 125 65.6
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 4.4e-35 153.3 450 33.1
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 6.5e-31 139.4 357 37.5
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.2e-29 135.2 430 34.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.7e-29 133.3 463 33.0
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.2e-27 128.6 360 36.7
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.5e-27 128.3 483 34.6
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.6e-27 127.5 472 36.0
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.4e-25 119.8 172 46.5
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.7e-23 114.8 80 72.5
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-19 102.1 105 60.0
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 9.1e-17 92.4 187 37.4
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 7.2e-14 82.8 92 57.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-12 78.2 87 51.7
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 6.8e-12 76.3 119 46.2
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.2e-11 75.5 171 34.5
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 8.3e-10 69.3 88 40.9
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 3.2e-09 67.4 506 29.4
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-08 64.7 109 44.0
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-07 62.0 108 44.4
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.3e-07 62.0 108 44.4
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 1.5e-06 58.5 175 31.4


User provided reference genes

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