Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 7.8e-269 929.9 466 100.0
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 8.7e-252 873.2 464 92.2
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 6.3e-226 787.3 464 82.3
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 2.7e-221 771.9 463 80.8
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 2.6e-219 765.4 462 79.2
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 3.3e-219 765.0 462 79.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 9.7e-219 763.5 462 81.0
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 6.3e-218 760.8 462 79.7
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.6e-216 756.1 462 79.4
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 2.6e-216 755.4 464 78.7
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 5.9e-216 754.2 462 78.6
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 5.9e-216 754.2 462 78.4
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 7.7e-216 753.8 462 78.6
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 1.3e-215 753.1 464 78.4
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 1.7e-215 752.7 462 78.4
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.8e-215 751.5 457 79.9
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 1.1e-214 750.0 462 79.4
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 1.5e-214 749.6 462 78.4
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 3.2e-214 748.4 462 78.1
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 5.5e-214 747.7 462 77.5
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 5.5e-214 747.7 467 78.6
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 5.5e-214 747.7 462 78.1
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 7.2e-214 747.3 464 76.9
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 7.2e-214 747.3 463 76.9
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 9.4e-214 746.9 462 77.7
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 1.6e-213 746.1 462 78.4
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 2.1e-213 745.7 466 78.1
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 3.6e-213 745.0 468 78.6
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 4.7e-213 744.6 466 78.1
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 4.7e-213 744.6 462 78.6
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 6.1e-213 744.2 471 77.1
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 8.0e-213 743.8 468 78.4
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 1.0e-212 743.4 468 78.4
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.4e-212 743.0 462 79.0
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 2.3e-212 742.3 462 77.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.3e-212 742.3 463 77.8
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.3e-212 742.3 463 77.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.3e-212 742.3 462 78.6
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.0e-211 739.2 466 76.8
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 3.4e-211 738.4 469 76.3
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 9.7e-211 736.9 466 76.0
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.8e-210 735.3 466 76.2
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 3.7e-210 734.9 466 76.4
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 4.8e-210 734.6 466 74.9
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 8.3e-210 733.8 462 76.6
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 1.4e-209 733.0 486 73.9
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 2.4e-209 732.3 462 76.8
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.1e-209 731.5 464 75.6
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 4.1e-209 731.5 466 75.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 5.3e-209 731.1 462 77.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 5.3e-209 731.1 462 77.9
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 5.3e-209 731.1 464 76.1
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 1.6e-208 729.6 465 75.7
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 2.0e-208 729.2 465 75.5
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 2.0e-208 729.2 465 75.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.0e-208 729.2 466 75.1
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 5.9e-208 727.6 465 75.5
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 1.0e-207 726.9 465 75.1
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 2.2e-207 725.7 465 75.3
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 3.8e-207 724.9 464 76.5
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 3.8e-207 724.9 463 76.2
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 5.0e-207 724.5 465 75.3
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 5.0e-207 724.5 473 74.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 6.5e-207 724.2 465 74.6
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.5e-206 723.0 475 74.1
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 1.5e-206 723.0 471 73.9
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 1.5e-206 723.0 471 73.9
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.9e-206 722.6 506 72.3
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.2e-206 721.5 463 75.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 1.2e-205 719.9 463 74.9
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.7e-205 718.8 475 73.7
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 4.7e-205 718.0 464 75.9
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 6.1e-205 717.6 466 74.5
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 8.0e-205 717.2 464 76.1
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 8.0e-205 717.2 481 73.6
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 1.0e-204 716.8 490 72.4
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.4e-204 716.5 465 74.6
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 2.8e-202 708.8 462 74.5
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.8e-202 708.0 473 73.2
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 3.5e-200 701.8 489 71.6
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.3e-196 689.1 473 72.5
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 9.8e-195 683.7 473 71.7
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.7e-194 682.9 465 72.3
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 8.3e-194 680.6 483 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 3.2e-185 652.1 446 70.2
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 4.6e-184 648.3 463 67.8
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 8.6e-183 644.0 447 70.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 5.6e-182 641.3 463 67.4
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.4e-180 636.7 473 67.2
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.2e-176 623.6 462 67.5
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.1e-172 610.5 467 64.5
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 5.8e-171 604.7 463 66.5
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 7.1e-169 597.8 474 66.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.7e-165 585.1 327 85.3
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.4e-162 574.7 374 75.1
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.2e-160 570.5 462 62.6
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 6.2e-157 558.1 466 63.7
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.3e-146 523.9 466 59.7
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.9e-143 512.3 463 57.9
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 3.2e-129 466.1 471 50.3
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 3.0e-127 459.5 302 74.2
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.6e-123 446.4 308 71.1
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.9e-122 443.0 307 71.3
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 7.9e-120 434.9 256 79.7
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 3.0e-119 433.0 333 63.1
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 1.7e-117 427.2 485 49.1
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 2.0e-115 420.2 446 51.1
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 5.2e-103 379.0 296 66.6
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.3e-79 300.4 217 68.2
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-78 297.4 372 46.2
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 5.7e-78 295.8 265 56.2
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.6e-75 287.7 159 84.9
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 3.0e-74 283.5 159 84.3
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.5e-73 281.2 158 81.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.8e-71 272.3 179 72.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.5e-70 271.2 167 76.6
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 7.0e-68 262.3 212 63.2
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.0e-54 217.6 176 61.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-49 201.8 171 59.1
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.6e-48 198.0 221 53.4
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 3.2e-36 157.1 174 52.3
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 3.2e-36 157.1 136 58.1
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 4.3e-33 146.7 106 69.8
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.6e-33 146.4 106 69.8
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 3.6e-32 143.7 106 67.0
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.8e-32 143.3 106 68.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.3e-26 125.2 327 34.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 5.1e-26 123.2 64 79.7
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 9.0e-23 112.5 114 50.0
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 6.7e-18 96.3 55 81.8
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 8.7e-18 95.9 54 83.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 5.0e-13 80.1 68 54.4
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-09 67.0 114 38.6
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 5.7e-09 66.6 47 63.8
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.9e-07 59.7 43 58.1
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 1.2e-06 58.9 37 75.7
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 3.4e-06 57.4 40 62.5


User provided reference genes

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