Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.0e-87 326.6 155 100.0
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.0e-87 326.6 155 100.0
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 4.2e-86 321.2 155 99.4
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.0e-79 300.1 155 90.3
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 3.3e-70 268.5 153 82.4
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 9.5e-70 266.9 151 82.1
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 8.0e-69 263.8 151 82.1
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.3e-68 262.3 151 80.8
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 6.8e-68 260.8 151 80.8
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 4.4e-67 258.1 151 80.1
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.8e-67 257.7 151 79.5
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.4e-65 252.3 151 77.5
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 4.1e-65 251.5 150 80.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 4.1e-65 251.5 146 77.4
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 4.1e-65 251.5 151 78.1
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.4e-65 251.1 146 77.4
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 7.0e-65 250.8 151 76.8
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 7.0e-65 250.8 152 77.0
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 9.2e-65 250.4 151 76.8
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 9.2e-65 250.4 151 76.8
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.2e-64 250.0 152 77.0
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.2e-64 250.0 151 76.8
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.1e-64 249.2 153 75.8
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.1e-64 249.2 150 78.0
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.1e-64 249.2 150 78.0
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.1e-64 249.2 150 78.0
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.1e-64 249.2 151 76.2
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.7e-64 248.8 151 76.2
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.7e-64 248.8 152 77.6
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 2.7e-64 248.8 144 77.1
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 3.5e-64 248.4 146 76.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 3.5e-64 248.4 152 75.7
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 4.6e-64 248.1 152 75.7
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 4.6e-64 248.1 144 77.8
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 4.6e-64 248.1 151 76.2
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 4.6e-64 248.1 152 77.0
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.0e-64 247.7 151 75.5
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.0e-64 247.7 151 75.5
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 6.0e-64 247.7 151 75.5
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 7.8e-64 247.3 151 75.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 7.8e-64 247.3 144 76.4
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 7.8e-64 247.3 144 78.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.8e-64 247.3 151 76.2
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.8e-64 247.3 151 76.2
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 7.8e-64 247.3 151 75.5
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 7.8e-64 247.3 152 75.0
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.0e-63 246.9 155 71.6
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-63 246.9 151 76.2
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-63 246.9 151 76.2
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.0e-63 246.9 152 73.7
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.3e-63 246.5 151 74.8
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.3e-63 246.5 151 74.8
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.7e-63 246.1 151 76.2
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.7e-63 246.1 150 76.7
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.3e-63 245.7 151 74.8
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 2.3e-63 245.7 146 76.0
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 3.0e-63 245.4 151 75.5
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.0e-63 245.4 151 74.2
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 3.0e-63 245.4 152 75.0
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 3.9e-63 245.0 151 74.8
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 3.9e-63 245.0 151 74.8
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.9e-63 245.0 151 74.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 3.9e-63 245.0 151 74.2
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 3.9e-63 245.0 155 70.3
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 3.9e-63 245.0 144 77.1
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 6.6e-63 244.2 151 74.8
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 8.6e-63 243.8 152 74.3
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 8.6e-63 243.8 151 74.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.5e-62 243.0 151 73.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.5e-62 243.0 151 72.8
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.5e-62 243.0 151 72.8
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.9e-62 242.7 143 76.2
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.9e-62 242.7 143 76.2
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.9e-62 242.7 150 74.7
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.5e-62 242.3 151 74.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 3.3e-62 241.9 151 74.2
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 3.3e-62 241.9 151 74.2
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 4.3e-62 241.5 151 72.2
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 5.6e-62 241.1 141 75.9
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 7.3e-62 240.7 152 71.7
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.8e-61 238.8 152 72.4
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.6e-61 238.4 138 76.1
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.6e-61 238.4 138 76.1
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.6e-61 238.4 158 70.9
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 4.7e-61 238.0 138 76.1
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 6.2e-61 237.7 153 70.6
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 6.2e-61 237.7 148 74.3
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 6.2e-61 237.7 151 72.8
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 8.1e-61 237.3 154 72.1
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.1e-60 236.9 158 70.3
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 3.1e-60 235.3 152 70.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 6.8e-60 234.2 153 70.6
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 6.8e-60 234.2 153 70.6
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 6.8e-60 234.2 153 70.6
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 8.9e-60 233.8 153 70.6
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.2e-59 233.4 153 69.9
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.6e-59 232.3 141 75.2
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.4e-59 231.9 154 69.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 4.4e-59 231.5 153 69.9
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 4.4e-59 231.5 151 70.2
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 7.5e-59 230.7 153 69.9
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.5e-59 230.7 153 69.9
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 9.9e-59 230.3 162 68.5
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 9.9e-59 230.3 162 68.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 1.7e-58 229.6 153 69.3
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-58 229.6 153 69.3
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.7e-58 229.6 153 69.3
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-58 229.2 153 69.3
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-58 229.2 153 69.3
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-58 229.2 153 69.3
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 3.7e-58 228.4 153 68.0
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.7e-58 228.4 156 69.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 6.4e-58 227.6 153 69.3
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 8.3e-58 227.3 153 68.6
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-57 226.5 152 68.4
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.1e-57 224.9 152 67.8
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 2.7e-56 222.2 153 68.0
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.7e-55 219.5 153 67.3
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.0e-55 218.8 151 68.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 5.1e-55 218.0 138 68.8
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 5.6e-54 214.5 138 67.4
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.5e-54 213.8 138 66.7
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-53 213.4 138 66.7
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.2e-53 213.4 151 70.2
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-53 211.8 154 66.2
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 3.6e-53 211.8 138 65.9
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.8e-52 209.5 151 68.2
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 6.8e-52 207.6 141 70.2
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.4e-51 205.3 141 66.7
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.2e-50 202.6 137 64.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-48 196.1 139 63.3
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-48 196.1 139 63.3
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-48 196.1 139 63.3
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 6.6e-47 191.0 138 59.4
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 8.7e-47 190.7 138 59.4
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.5e-46 189.1 138 58.7
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 3.3e-46 188.7 138 58.7
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.3e-46 188.3 138 58.7
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.3e-46 188.3 138 58.7
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 5.6e-46 188.0 138 59.4
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 5.6e-46 188.0 138 59.4
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-45 186.8 138 58.7
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-45 186.8 138 58.7
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-45 186.8 138 58.7
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.1e-45 186.0 126 66.7
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 8.1e-45 184.1 111 74.8
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 6.9e-44 181.0 125 67.2
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-43 179.9 130 60.0
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 3.4e-43 178.7 152 53.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 4.4e-43 178.3 131 58.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-42 176.0 133 63.9
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 3.8e-42 175.3 149 59.7
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.6e-40 169.9 151 59.6
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.5e-40 168.7 76 100.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 1.1e-38 163.7 149 56.4
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.4e-36 156.8 138 52.9
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-36 156.4 139 56.1
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 3.4e-35 152.1 151 53.6
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.8e-34 148.7 151 52.3
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 7.1e-33 144.4 118 63.6
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 9.3e-33 144.1 109 58.7
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 4.6e-32 141.7 134 55.2
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 9.3e-25 117.5 72 66.7
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 9.3e-25 117.5 138 41.3
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.8e-23 113.2 138 42.0
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.3e-23 112.8 89 64.0
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.1e-22 110.5 145 40.0
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-21 107.1 88 52.3
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.6e-21 106.7 133 43.6
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 7.1e-17 91.3 53 79.2
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.0e-15 87.4 92 48.9
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.8e-15 86.7 92 47.8
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.4e-12 77.0 73 52.1
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-09 66.6 33 87.9
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 2.5e-09 66.2 52 65.4
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 7.2e-09 64.7 33 81.8
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.8e-07 60.1 31 83.9
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-06 57.0 39 64.1


User provided reference genes

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