Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.7e-230 802.4 420 100.0
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 5.1e-158 561.6 330 85.8
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 1.5e-114 417.2 363 61.4
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 4.3e-109 399.1 365 57.3
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 9.7e-109 397.9 341 58.7
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 9.7e-109 397.9 357 58.0
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.7e-108 397.1 364 56.9
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.8e-108 395.6 362 57.5
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 1.4e-107 394.0 331 59.8
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 3.1e-107 392.9 363 56.7
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 4.1e-107 392.5 373 55.2
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 9.1e-107 391.3 363 56.7
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 1.2e-106 391.0 352 58.0
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 1.2e-106 391.0 330 60.0
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 1.5e-106 390.6 358 56.7
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 7.7e-106 388.3 362 56.9
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 7.7e-106 388.3 386 54.9
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 1.0e-105 387.9 385 54.3
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.3e-105 387.5 341 58.1
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.7e-105 387.1 389 54.0
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 1.7e-105 387.1 391 54.0
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 2.2e-105 386.7 357 56.3
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 3.8e-105 386.0 312 61.2
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 3.8e-105 386.0 354 57.9
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 6.5e-105 385.2 383 55.1
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 6.5e-105 385.2 330 58.2
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 6.5e-105 385.2 382 55.5
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 8.5e-105 384.8 368 55.4
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 8.5e-105 384.8 379 55.4
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 8.5e-105 384.8 324 60.8
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.1e-104 384.4 322 61.8
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.4e-104 384.0 352 57.1
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 1.9e-104 383.6 380 55.0
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 2.5e-104 383.3 323 59.1
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 2.5e-104 383.3 351 57.3
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 3.2e-104 382.9 388 53.6
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 5.5e-104 382.1 388 53.6
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 1.2e-103 380.9 339 55.5
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 1.6e-103 380.6 334 58.7
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 2.1e-103 380.2 364 56.3
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 2.7e-103 379.8 363 55.9
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 4.7e-103 379.0 359 56.0
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 6.1e-103 378.6 378 54.2
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 6.1e-103 378.6 372 54.6
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 6.1e-103 378.6 368 54.9
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 7.9e-103 378.3 365 54.0
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 7.9e-103 378.3 385 54.3
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 1.0e-102 377.9 334 57.2
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 1.0e-102 377.9 363 54.0
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 1.4e-102 377.5 357 54.3
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 1.4e-102 377.5 325 59.7
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 3.0e-102 376.3 368 54.1
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 6.7e-102 375.2 434 49.3
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 1.1e-101 374.4 369 53.7
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 1.5e-101 374.0 369 54.7
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 2.0e-101 373.6 367 54.8
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.0e-101 373.6 351 56.1
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 2.0e-101 373.6 382 53.7
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 2.0e-101 373.6 380 53.7
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 4.4e-101 372.5 352 56.8
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 4.4e-101 372.5 382 52.6
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 1.3e-100 370.9 337 56.4
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.7e-100 370.5 370 53.2
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.2e-100 370.2 352 56.2
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.8e-100 369.8 364 55.8
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 3.7e-100 369.4 353 54.7
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 1.4e-99 367.5 354 54.2
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 1.8e-99 367.1 419 49.4
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 1.8e-99 367.1 355 54.6
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 4.1e-99 365.9 365 53.7
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 6.9e-99 365.2 379 52.8
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 6.9e-99 365.2 368 53.5
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 9.1e-99 364.8 358 54.5
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 1.2e-98 364.4 378 52.9
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 1.2e-98 364.4 335 57.0
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 1.5e-98 364.0 371 51.5
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 2.6e-98 363.2 353 54.7
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.5e-98 362.5 363 54.5
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 7.7e-98 361.7 353 53.5
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 2.9e-97 359.8 371 51.2
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 2.5e-96 356.7 385 51.4
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 4.2e-96 355.9 381 52.2
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 2.1e-95 353.6 384 50.3
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.1e-91 341.3 369 51.2
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 7.0e-91 338.6 387 50.1
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 1.7e-89 334.0 361 51.8
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 2.2e-89 333.6 313 53.7
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 2.2e-89 333.6 313 53.7
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 2.3e-86 323.6 310 53.9
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 3.0e-86 323.2 275 58.9
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 2.8e-84 316.6 319 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 6.3e-84 315.5 338 52.4
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.6e-82 310.8 316 52.5
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 1.1e-80 304.7 237 62.4
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 1.1e-80 304.7 311 53.7
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 1.5e-80 304.3 311 53.7
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 6.8e-78 295.4 260 58.1
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 2.1e-71 273.9 371 43.9
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 4.5e-66 256.1 366 42.3
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 7.3e-64 248.8 385 41.8
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 8.9e-62 241.9 169 66.3
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 1.2e-61 241.5 438 36.5
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 1.1e-59 235.0 167 66.5
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 1.2e-58 231.5 170 65.3
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 1.2e-58 231.5 169 65.1
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 3.3e-56 223.4 430 37.7
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 8.0e-55 218.8 238 49.6
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 2.1e-47 194.1 179 58.1
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 5.2e-46 189.5 125 69.6
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 3.9e-41 173.3 218 46.3
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.1e-33 146.4 140 55.0
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 7.3e-24 115.9 306 31.0
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 1.5e-21 108.2 97 54.6
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.5e-16 91.7 249 31.3
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 2.5e-16 90.9 51 78.4
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.2e-13 82.0 140 37.1
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 8.4e-12 75.9 55 61.8


User provided reference genes

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