Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 0.0e+00 1217.2 673 100.0
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 5.4e-186 655.2 467 66.2
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 1.6e-185 653.7 483 64.2
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 8.9e-181 637.9 496 61.3
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.0e-180 636.7 478 62.1
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 1.3e-179 634.0 466 64.4
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.7e-179 633.6 470 62.8
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 7.1e-178 628.2 489 61.1
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 9.2e-178 627.9 467 63.4
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.2e-177 627.5 489 61.1
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 3.5e-177 625.9 470 63.4
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 6.0e-177 625.2 470 63.4
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.0e-176 622.9 470 63.0
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.0e-176 622.9 470 63.2
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 6.6e-176 621.7 466 63.3
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 6.6e-176 621.7 470 62.8
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 6.6e-176 621.7 470 62.3
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.5e-175 620.5 470 62.6
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.9e-175 620.2 470 62.3
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.9e-175 620.2 511 59.1
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.9e-175 620.2 466 62.4
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 3.3e-175 619.4 470 62.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 5.6e-175 618.6 485 61.4
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 7.3e-175 618.2 470 61.5
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 7.3e-175 618.2 490 59.8
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 7.3e-175 618.2 466 62.2
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 7.3e-175 618.2 486 60.1
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 9.5e-175 617.8 486 60.1
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.6e-174 617.1 471 61.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.6e-174 615.9 490 59.6
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 3.6e-174 615.9 466 61.8
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 4.7e-174 615.5 478 61.5
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 6.2e-174 615.1 470 60.9
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 6.2e-174 615.1 466 62.7
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 8.1e-174 614.8 470 61.9
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.1e-173 614.4 489 59.9
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.1e-173 614.4 470 61.9
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.1e-173 614.4 489 59.7
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.1e-173 614.4 470 61.7
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 1.4e-173 614.0 466 62.2
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.4e-173 614.0 495 59.8
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.4e-173 614.0 466 62.0
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.8e-173 613.6 464 62.5
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.1e-173 612.8 466 61.6
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 3.1e-173 612.8 467 62.3
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.1e-173 612.8 496 59.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 4.0e-173 612.5 507 58.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 4.0e-173 612.5 496 58.9
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 6.8e-173 611.7 492 58.7
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 6.8e-173 611.7 501 58.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 8.9e-173 611.3 470 61.7
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 8.9e-173 611.3 487 60.2
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.5e-172 610.5 486 60.1
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.0e-172 610.1 485 60.2
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.0e-172 610.1 470 61.1
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 2.0e-172 610.1 467 61.5
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 2.0e-172 610.1 466 61.6
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 2.6e-172 609.8 469 61.4
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 2.6e-172 609.8 466 61.6
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 2.6e-172 609.8 466 61.6
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 2.6e-172 609.8 466 61.6
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.4e-172 609.4 484 60.3
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 4.4e-172 609.0 487 60.2
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 9.9e-172 607.8 466 61.6
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.3e-171 607.4 466 61.4
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 2.9e-171 606.3 500 57.8
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 3.7e-171 605.9 496 58.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 6.4e-171 605.1 470 60.4
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.4e-170 603.2 470 61.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 4.1e-170 602.4 473 60.3
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 7.1e-170 601.7 483 59.2
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 9.2e-170 601.3 538 55.2
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.6e-169 600.5 513 57.3
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 2.1e-169 600.1 470 60.6
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.1e-169 600.1 470 60.6
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 2.1e-169 600.1 470 60.4
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.5e-169 599.4 472 60.2
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.1e-167 594.3 492 58.1
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.5e-167 594.0 490 58.4
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 4.3e-167 592.4 490 58.2
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 7.3e-167 591.7 502 56.4
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.8e-166 589.7 501 58.3
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 3.6e-166 589.3 488 56.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.7e-166 589.0 525 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 6.2e-166 588.6 487 57.7
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.8e-165 585.1 470 59.4
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.5e-164 583.9 493 57.2
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.0e-164 583.6 471 60.1
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 4.9e-163 578.9 494 57.7
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 8.7e-160 568.2 466 56.0
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.1e-159 567.8 492 57.1
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.9e-159 567.0 493 56.4
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 5.6e-159 565.5 484 53.9
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.8e-158 562.4 562 51.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.0e-157 558.1 451 59.4
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 9.9e-156 554.7 426 62.0
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.2e-154 549.7 426 62.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.6e-153 547.4 482 56.4
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.6e-148 530.0 470 56.8
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 7.6e-148 528.5 470 55.1
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.3e-144 516.9 402 61.2
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.1e-143 514.6 573 46.9
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.8e-142 509.2 507 52.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 3.7e-134 483.0 335 66.6
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.6e-132 475.3 373 60.9
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.2e-122 442.2 366 59.6
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.4e-111 406.4 498 42.8
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.5e-103 381.3 488 45.1
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.8e-96 357.8 517 39.7
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 4.2e-90 336.7 452 44.0
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 9.4e-90 335.5 529 36.7
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.7e-89 334.0 294 56.1
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-87 328.2 267 58.1
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.1e-85 322.0 518 33.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.8e-73 280.8 293 50.5
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.0e-72 276.9 213 61.5
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.4e-61 241.9 176 63.1
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.5e-55 221.9 264 45.1
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 6.6e-51 206.5 156 59.6
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.5e-36 157.5 171 45.6
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.1e-32 146.0 106 66.0
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 7.4e-26 123.2 145 46.2
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.2e-20 105.9 128 46.1
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.9e-13 82.0 76 50.0
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.7e-10 69.7 58 53.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-08 66.2 60 51.7


User provided reference genes

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