Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 2.0e-247 858.6 426 100.0
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 4.4e-85 319.3 288 58.7
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 9.9e-85 318.2 673 34.5
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 3.8e-84 316.2 276 59.8
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 1.1e-83 314.7 326 53.7
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 4.2e-83 312.8 640 34.8
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 4.2e-83 312.8 663 34.4
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 9.2e-83 311.6 277 58.5
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 9.2e-83 311.6 619 35.1
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.2e-82 311.2 340 51.8
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.2e-82 311.2 285 58.2
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 2.1e-82 310.5 649 34.4
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 2.7e-82 310.1 276 59.1
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 3.5e-82 309.7 646 34.2
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 4.6e-82 309.3 631 34.1
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 6.0e-82 308.9 285 58.6
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 6.0e-82 308.9 637 34.7
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 7.8e-82 308.5 276 58.0
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.3e-81 307.8 274 58.4
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.3e-81 307.8 630 33.7
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 3.0e-81 306.6 336 53.3
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.0e-81 306.6 547 37.3
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.9e-81 306.2 630 33.7
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 3.9e-81 306.2 633 34.3
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 6.6e-81 305.4 273 58.2
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 8.7e-81 305.1 278 56.8
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 8.7e-81 305.1 297 54.9
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.5e-80 304.3 333 51.4
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.9e-80 303.9 623 34.3
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-80 303.9 254 61.4
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 2.5e-80 303.5 396 44.9
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 2.5e-80 303.5 286 55.6
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 3.3e-80 303.1 277 57.8
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 3.3e-80 303.1 548 37.6
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.3e-80 302.0 331 51.7
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.2e-79 301.2 275 58.2
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.6e-79 300.8 285 55.8
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.8e-79 300.1 275 56.7
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 3.6e-79 299.7 275 56.7
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.6e-79 299.7 273 57.1
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.1e-78 298.1 276 56.9
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.4e-78 297.7 285 55.8
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 3.1e-78 296.6 277 56.3
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 4.0e-78 296.2 292 55.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 5.3e-78 295.8 313 50.5
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 5.3e-78 295.8 315 52.1
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.2e-77 294.7 356 48.0
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 2.6e-77 293.5 276 55.8
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 4.4e-77 292.7 275 56.4
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 4.4e-77 292.7 281 54.4
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 7.6e-77 292.0 285 55.4
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 7.6e-77 292.0 285 55.4
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.6e-77 292.0 550 36.5
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.9e-77 291.6 274 54.4
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.7e-76 290.8 635 33.1
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.7e-76 290.8 635 33.1
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.7e-76 290.8 635 33.1
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.2e-76 290.4 278 55.4
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.2e-76 290.4 278 55.0
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 2.2e-76 290.4 565 35.4
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.9e-76 290.0 337 48.1
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 3.8e-76 289.7 337 48.1
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 3.8e-76 289.7 565 35.2
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.8e-76 289.7 277 56.0
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 6.4e-76 288.9 272 56.6
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.4e-75 287.7 304 52.6
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 4.2e-75 286.2 278 54.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.2e-75 286.2 336 47.3
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 4.2e-75 286.2 280 55.7
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 7.1e-75 285.4 559 34.3
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 2.1e-74 283.9 275 54.9
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.7e-74 283.5 282 53.9
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.7e-74 283.5 326 49.4
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.6e-74 282.7 276 54.3
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 7.8e-74 282.0 294 52.4
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 1.7e-73 280.8 277 54.2
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 4.3e-72 276.2 599 34.6
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 5.6e-72 275.8 332 48.2
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 7.3e-72 275.4 273 55.7
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 1.1e-70 271.6 330 48.2
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 4.5e-69 266.2 541 37.3
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 8.4e-68 261.9 224 61.6
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.1e-67 261.5 222 61.3
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.4e-67 260.4 249 54.6
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.1e-66 257.3 223 59.6
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.7e-66 256.9 286 50.3
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 6.0e-66 255.8 285 49.5
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 7.9e-66 255.4 287 50.5
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.1e-64 251.5 303 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 5.6e-64 249.2 540 32.0
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 7.4e-64 248.8 597 32.0
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.4e-62 244.6 287 48.1
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.5e-61 241.1 585 30.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.2e-60 237.3 248 52.4
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.9e-56 224.2 278 43.5
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.4e-53 213.4 545 33.6
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.0e-52 211.8 561 32.1
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.3e-52 211.5 434 35.5
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.1e-50 204.1 186 57.0
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 7.9e-50 202.2 307 38.8
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.7e-44 184.5 167 57.5
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.1e-40 171.8 166 54.2
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 7.7e-37 159.1 160 53.1
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 2.5e-35 154.1 135 60.7
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.7e-34 150.6 272 37.1
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 4.7e-34 149.8 132 58.3
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 8.8e-33 145.6 460 27.2
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 2.8e-31 140.6 292 32.5
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.7e-31 140.2 136 55.1
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.8e-30 137.9 144 54.2
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.8e-30 137.9 106 64.2
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.8e-30 137.9 140 49.3
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 9.1e-30 135.6 174 47.1
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.0e-28 132.1 164 45.7
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.2e-27 127.1 176 44.3
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 4.2e-27 126.7 106 59.4
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.8e-25 121.3 164 43.9
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 7.4e-24 115.9 331 29.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.5e-19 101.7 268 27.6
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.7e-18 97.4 163 38.7
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 6.8e-17 92.8 117 41.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.4e-16 90.5 88 52.3
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.7e-15 88.2 54 74.1
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.8e-15 87.4 144 41.0
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.8e-15 87.4 156 35.9
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.1e-14 85.5 52 78.8
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 2.7e-13 80.9 120 40.0
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 3.5e-13 80.5 113 38.1
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.2e-12 77.8 120 37.5
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.2e-12 77.8 111 36.9
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.8e-12 77.0 107 39.3
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 6.5e-12 76.3 98 38.8
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.5e-11 73.2 72 41.7
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.7e-10 70.1 109 34.9
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 7.5e-08 62.8 63 47.6
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.3e-07 62.0 87 37.9
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 3.1e-06 57.4 60 43.3


User provided reference genes

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