Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.3e-271 939.1 466 100.0
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 2.0e-118 430.3 517 49.9
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.8e-95 354.0 518 42.9
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 5.7e-94 349.0 498 43.0
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.2e-93 347.1 502 43.0
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.4e-92 343.6 493 43.4
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 5.9e-91 339.0 525 40.4
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 5.9e-91 339.0 504 41.7
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.7e-90 337.4 528 41.1
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 2.9e-90 336.7 532 41.9
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 2.9e-90 336.7 521 40.7
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 2.9e-90 336.7 512 41.6
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 5.0e-90 335.9 524 42.0
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 8.5e-90 335.1 493 43.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.5e-89 334.3 524 41.2
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.9e-89 334.0 495 41.8
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 1.9e-89 334.0 527 42.5
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 2.5e-89 333.6 509 42.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 3.2e-89 333.2 494 44.1
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.6e-88 330.9 524 40.6
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.1e-88 330.5 513 40.9
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.1e-88 330.5 476 43.9
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.7e-88 330.1 510 41.6
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 3.6e-88 329.7 488 43.6
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 3.6e-88 329.7 488 43.6
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 3.6e-88 329.7 488 43.6
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 6.1e-88 328.9 532 40.0
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 8.0e-88 328.6 527 41.7
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.4e-87 327.8 522 42.1
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.8e-87 327.4 530 41.5
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 3.0e-87 326.6 515 41.7
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 5.2e-87 325.9 480 44.2
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 6.8e-87 325.5 522 41.0
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 8.8e-87 325.1 480 44.0
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 8.8e-87 325.1 497 39.4
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.2e-86 324.7 523 41.9
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.5e-86 324.3 510 42.0
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.6e-86 323.6 508 40.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 5.7e-86 322.4 519 39.5
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 7.5e-86 322.0 518 40.7
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.8e-86 321.6 523 41.3
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.3e-85 321.2 552 39.5
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.7e-85 320.9 490 39.8
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.7e-85 320.9 528 39.4
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.7e-85 319.7 508 42.7
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 6.3e-85 318.9 493 41.0
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 6.3e-85 318.9 490 39.6
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.1e-84 318.2 526 40.7
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.8e-84 317.4 513 39.6
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.8e-84 317.4 517 39.7
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 3.1e-84 316.6 534 39.3
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 3.1e-84 316.6 531 39.7
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.1e-84 316.6 430 42.8
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 3.1e-84 316.6 516 41.1
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 9.2e-84 315.1 521 39.7
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.2e-83 314.7 542 39.1
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.2e-83 314.7 544 39.5
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.2e-83 314.7 514 40.7
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.2e-83 314.7 494 40.1
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.6e-83 314.3 445 42.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.0e-82 311.6 502 41.2
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 2.9e-82 310.1 525 39.0
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 6.6e-82 308.9 471 41.2
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 8.6e-82 308.5 502 38.8
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 3.3e-81 306.6 518 39.8
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.3e-81 306.6 494 40.5
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 3.3e-81 306.6 497 42.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.3e-81 306.2 438 44.3
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 7.3e-81 305.4 527 37.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 9.5e-81 305.1 539 38.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.2e-80 304.7 469 42.4
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.6e-80 303.1 577 37.6
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 8.0e-80 302.0 481 40.5
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 8.0e-80 302.0 455 40.2
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.8e-79 300.8 482 41.9
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 2.3e-79 300.4 448 40.6
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 3.4e-78 296.6 569 37.1
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 4.4e-78 296.2 522 38.7
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 5.7e-78 295.8 446 42.2
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.9e-77 293.5 454 40.7
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 3.2e-76 290.0 470 41.7
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 3.2e-76 290.0 500 38.6
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 3.2e-76 290.0 461 40.3
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 9.2e-76 288.5 446 41.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.2e-70 271.6 447 40.9
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.5e-70 271.2 356 45.8
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 4.4e-70 269.6 359 46.8
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 5.8e-70 269.2 468 40.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 7.5e-70 268.9 453 39.3
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.9e-68 264.2 518 37.3
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 2.7e-67 260.4 452 38.7
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 6.0e-67 259.2 695 31.5
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 7.8e-67 258.8 450 40.7
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 6.6e-66 255.8 481 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 7.3e-65 252.3 455 37.4
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.6e-64 250.0 442 41.2
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 4.4e-62 243.0 515 35.1
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 9.8e-62 241.9 420 38.8
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 1.3e-61 241.5 442 36.9
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.4e-60 236.1 407 40.5
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.7e-53 214.5 218 51.4
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 8.4e-53 212.2 434 35.5
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 6.0e-51 206.1 377 37.9
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.6e-49 199.5 241 48.5
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 4.7e-48 196.4 231 48.1
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 7.8e-43 179.1 207 45.4
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.5e-33 147.5 191 49.2
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.1e-32 142.5 163 52.1
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 6.4e-29 132.9 286 36.4
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.1e-28 132.1 129 55.0
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.1e-28 132.1 137 50.4
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 7.9e-27 125.9 193 41.5
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.9e-26 123.6 101 62.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.6e-24 118.2 136 47.8
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 3.7e-24 117.1 89 69.7
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 6.2e-24 116.3 302 36.1
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.1e-23 115.5 80 71.2
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.5e-20 104.4 271 28.8
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 9.3e-20 102.4 107 53.3
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 2.5e-17 94.4 473 26.8
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.1e-16 91.3 140 41.4
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.8e-16 90.9 119 38.7
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 3.7e-16 90.5 123 44.7
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 2.0e-14 84.7 212 33.5
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 3.4e-14 84.0 54 70.4
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.9e-14 83.2 90 51.1
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.3e-13 82.0 53 75.5
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 6.5e-13 79.7 123 35.8
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.4e-12 78.6 117 36.8
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.5e-12 77.8 54 66.7
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.0e-10 72.4 86 38.4
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.1e-07 62.4 62 43.5


User provided reference genes

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